CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04100.1	CDX73678	AT3G51920.1	17360592
AT3G04100.1	CDX95314	AT3G51920.1	17360592
AT3G04100.1	CDY23174	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037759.1-P	Field mustard	nucleus	100.0	100.0
CDX81208	Canola	nucleus	90.0	85.07
CDY21138	Canola	nucleus	48.42	52.87
CDY71265	Canola	nucleus	50.53	51.34
CDY50884	Canola	nucleus	45.79	45.08
CDY42905	Canola	nucleus	42.63	41.97
AT3G04100.1	Thale cress	nucleus	45.26	41.55

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078J8H1	UniProt:A0A078J8H1	EnsemblPlants:CDY60053	ProteinID:CDY60053
ProteinID:CDY60053.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00028070001	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002541A6E	SEG:seg	:	:	:	:

Description

BnaA09g52420DBnaA09g52420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8H1]

Coordinates

chrLK033834:+:44137..44709

Molecular Weight (calculated)

21242.3 Da

IEP (calculated)

8.863

GRAVY (calculated)

-0.835

Length

190 amino acids

Sequence
(BLAST)

001: MKKVESYKAR RTTFYKRKAG IFKKMNEIIA ECGVEASFLV FPESGYPRTF AHPSMEDAVD RVKCSLGHEP SGKDDASIGS LVEAHKKRKN EELAKKLCDL
101: HEELKMAEEK EKKMVEKKKI KELKNEWPNT LNEGVNKDEL KRVHQAFVEL SYSLSGKALQ RLGKNGDGSS SALAERGYCD GGEAGAGEQT

Best Arabidopsis Sequence Match ( AT3G04100.1 )
(BLAST)

001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA

Arabidopsis Description

AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.