Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040149.1-P | Field mustard | nucleus | 43.48 | 51.72 |
| CDY21138 | Canola | nucleus | 42.51 | 50.57 |
| CDY71265 | Canola | nucleus | 45.41 | 50.27 |
| Bra031945.1-P | Field mustard | nucleus | 45.41 | 48.7 |
| CDY50884 | Canola | nucleus | 45.41 | 48.7 |
| CDX81208 | Canola | nucleus | 45.89 | 47.26 |
| CDY42905 | Canola | nucleus | 43.48 | 46.63 |
| Bra037759.1-P | Field mustard | nucleus | 41.55 | 45.26 |
| CDY60053 | Canola | nucleus | 41.55 | 45.26 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:819565 | ProteinID:AAF26803.1 | ProteinID:AEE74037.1 | Symbol:AGL57 |
| ArrayExpress:AT3G04100 | EnsemblPlantsGene:AT3G04100 | RefSeq:AT3G04100 | TAIR:AT3G04100 | RefSeq:AT3G04100-TAIR-G | EnsemblPlants:AT3G04100.1 |
| TAIR:AT3G04100.1 | ncoils:Coil | EMBL:DQ056586 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | RefSeq:NP_187060.1 |
| PFAM:PF00319 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0009009 | PO:PO:0020093 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | UniProt:Q9M8W6 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A5426 | SEG:seg | : | : |
Description
AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
Coordinates
chr3:+:1075299..1075922
Molecular Weight (calculated)
24099.5 Da
IEP (calculated)
10.518
GRAVY (calculated)
-0.857
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.