Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04100.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT3G04100.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT3G04100.1 | CDY23174 | AT3G51920.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040149.1-P | Field mustard | nucleus | 98.28 | 98.28 |
| CDY71265 | Canola | nucleus | 93.1 | 86.63 |
| CDX81208 | Canola | nucleus | 57.47 | 49.75 |
| CDY60053 | Canola | nucleus | 52.87 | 48.42 |
| CDY50884 | Canola | nucleus | 49.43 | 44.56 |
| CDY42905 | Canola | nucleus | 48.28 | 43.52 |
| AT3G04100.1 | Thale cress | nucleus | 50.57 | 42.51 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078G8V9 | UniProt:A0A078G8V9 | EnsemblPlants:CDY21138 | ProteinID:CDY21138 |
| ProteinID:CDY21138.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00015324001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004EE8243 | SEG:seg | : | : | : |
Description
BnaA01g33690DBnaA01g33690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8V9]
Coordinates
chrLK032116:-:192807..193331
Molecular Weight (calculated)
19970.7 Da
IEP (calculated)
7.557
GRAVY (calculated)
-0.878
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEVEDYENR MTTFSKRKTG IFKKMNELVA LCGVEAAFVA FSETGKSHTF AHPCMEDAVG RLKSPLIDES PRKDDTNTDI LVGAYKSQKN EDLKKLYADF
101: AEELEMEKEK EKKLKKSKSD KRFDKMWWNA EGLSVEERKQ LHQRFVELNV TLCGKVSQQF RKDGDGSDLA GHGH
101: AEELEMEKEK EKKLKKSKSD KRFDKMWWNA EGLSVEERKQ LHQRFVELNV TLCGKVSQQF RKDGDGSDLA GHGH
001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
Arabidopsis Description
AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.