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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23170.1 CDX73678 AT3G51920.1 17360592
AT4G23170.1 CDX95314 AT3G51920.1 17360592
AT4G23170.1 CDY23174 AT3G51920.1 17360592
AT4G23170.1 CDY06478 AT4G14640.1 17360592
AT4G23170.1 CDX92401 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY01121 Canola extracellular 33.92 45.63
CDY47325 Canola endoplasmic reticulum, extracellular, vacuole 33.92 45.45
CDY10860 Canola endoplasmic reticulum, plasma membrane 32.74 39.22
CDY41770 Canola endoplasmic reticulum, vacuole 29.79 38.85
AT4G23170.1 Thale cress extracellular 30.09 38.49
CDY41240 Canola extracellular, plasma membrane 41.0 36.58
CDY12405 Canola plasma membrane 29.79 34.47
CDY10852 Canola plasma membrane 37.46 33.42
KRG91214 Soybean plasma membrane 21.53 21.79
CDY52060 Canola endoplasmic reticulum, extracellular, vacuole 16.22 21.57
CDY57408 Canola endoplasmic reticulum, plasma membrane, vacuole 16.22 21.57
CDY68211 Canola endoplasmic reticulum, extracellular, vacuole 16.22 21.57
CDX85345 Canola plasma membrane 16.52 21.46
CDX86299 Canola extracellular 16.52 21.46
Os07t0537200-01 Rice plasma membrane 17.99 20.96
CDY39159 Canola plasma membrane 37.17 20.93
KRG91211 Soybean plasma membrane 20.65 20.83
Os07t0537300-00 Rice extracellular 17.7 20.83
TraesCS2B01G242400.1 Wheat plastid 23.01 20.74
TraesCS2B01G242200.1 Wheat endoplasmic reticulum, plasma membrane 18.58 20.66
Zm00001d021693_P001 Maize endoplasmic reticulum, plasma membrane 16.81 19.86
TraesCS3D01G501300.3 Wheat plasma membrane 23.3 19.46
HORVU3Hr1G109450.1 Barley endoplasmic reticulum 7.08 18.9
VIT_02s0087g01010.t01 Wine grape plasma membrane 24.78 18.83
TraesCS2A01G216800.1 Wheat endoplasmic reticulum, vacuole 17.99 18.54
TraesCS3D01G025300.1 Wheat extracellular, plasma membrane 15.04 18.28
HORVU2Hr1G125180.2 Barley extracellular 15.34 18.25
TraesCS3B01G024400.1 Wheat extracellular 15.04 18.15
TraesCS2D01G222200.1 Wheat endoplasmic reticulum, plasma membrane 15.63 17.79
TraesCSU01G233400.1 Wheat extracellular 14.45 17.56
HORVU3Hr1G002810.2 Barley extracellular 15.34 16.61
Zm00001d040823_P001 Maize plasma membrane 23.6 16.19
TraesCS1D01G431100.1 Wheat extracellular 14.45 15.76
TraesCS2D01G222500.1 Wheat vacuole 18.29 15.09
Zm00001d030212_P001 Maize plasma membrane 22.42 14.99
Os07t0540600-00 Rice endoplasmic reticulum, plasma membrane 16.52 14.97
TraesCS3A01G494000.1 Wheat plasma membrane 22.12 14.65
Os10t0329900-00 Rice endoplasmic reticulum, plasma membrane 16.52 13.86
Zm00001d021683_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 19.47 12.97
TraesCS3D01G501200.1 Wheat plasma membrane 23.89 11.64
HORVU3Hr1G109380.8 Barley mitochondrion 5.6 7.72
Protein Annotations
Gene3D:3.30.200.20Gene3D:3.30.430.20MapMan:35.1GO:A0A078FQD4UniProt:A0A078FQD4EnsemblPlants:CDY15079
ProteinID:CDY15079ProteinID:CDY15079.1InterPro:GNK2InterPro:GNK2_sfGO:GO:0005575GO:GO:0016020
GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00085218001InterPro:IPR002902InterPro:IPR038408InterPro:Kinase-like_dom_sfPFAM:PF01657
PFscan:PS51473PANTHER:PTHR32099PANTHER:PTHR32099:SF13SUPFAM:SSF56112TMHMM:TMhelixUniParc:UPI0004EDF948
SEG:seg:::::
Description
BnaC03g44400DBnaC03g44400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQD4]
Coordinates
chrLK032051:+:390777..396542
Molecular Weight (calculated)
38154.4 Da
IEP (calculated)
6.494
GRAVY (calculated)
-0.158
Length
339 amino acids
Sequence
(BLAST)
001: MVTGLFLCRG DVSQEVCRNC VTFTVYESFT QCPTQREAVL YYDECMLRYS HRNILSTIET ARPFPLASNI AILTDQQKGF RDLVLSMMNH TATEAAVSSR
101: KFGARKDNFI PVQRVYGLVQ CTPDLTTQEC SRCLEASINQ LPTANNGTRV LLPSCNSRYE SYPFYNESAA SIFLSPLPPP LSPRPGQSSV NFLSIVVPII
201: VVVLLFIAGY CFLSKREKRT YEIAPTFNHE DDITIIDSLQ LDYRTIQAAT NYYSEDNKIG QGGFGEVYKG IFSNGTELLG FSLEGEERIL VYEYVPYFLF
301: GKPCKARLAG LDSTIQYNWR SCSRDSVSSS RFTANNHTP
Best Arabidopsis Sequence Match ( AT4G23150.1 )
(BLAST)
001: MSSLFPFIFL FLFSFLTSFR ASAQDPRFLA YYCPNATTYS SNSTYLTNLK TLLSSLSSRN ASYSTGFQNA TVGQALDRVT GLFLCRGDVS PEVCRNCVTF
101: AVNNTFSRCP NQREAVFYYE ECILRYSHKN ILSTAITNEG EFILRNPNHI SPIQNQINQF TNLVLSNMNQ IAIEAADNPR KFSTIKTELT ALQTFYGLVQ
201: CTPDLSRQNC MNCLTSSINR MPFSRIGARQ FWPSCNSRYE LYDFYNETAI GTPPPPLPPL ASPSLSDKSG NSNVVVVAVV VPIIVAVLIF IAGYCFFAKR
301: AKKTYGTTPA LDEDDKTTIE SLQLDYRAIQ AATNDFSENN KIGRGGFGDV YKGTFSNGTE VAVKRLSKTS EQGDTEFKNE VVVVANLRHK NLVRILGFSI
401: EREERILVYE YVENKSLDNF LFDPAKKGQL YWTQRYHIIG GIARGILYLH QDSRLTIIHR DLKASNILLD ADMNPKIADF GMARIFGMDQ TQQNTSRIVG
501: TYGYMSPEYA MRGQFSMKSD VYSFGVLVLE IISGRKNNSF IETDDAQDLV THAWRLWRNG TALDLVDPFI ADSCRKSEVV RCTHIGLLCV QEDPVKRPAM
601: STISVMLTSN TMALPAPQQP GFFVRSRPGT NRLDSDQSTT NKSVTVSIDD KSMSDLDPR
Arabidopsis Description
CRK7Cysteine-rich receptor-like protein kinase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.