CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23170.1	CDX73678	AT3G51920.1	17360592
AT4G23170.1	CDX95314	AT3G51920.1	17360592
AT4G23170.1	CDY23174	AT3G51920.1	17360592
AT4G23170.1	CDY06478	AT4G14640.1	17360592
AT4G23170.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01121	Canola	extracellular	96.84	97.22
AT4G23170.1	Thale cress	extracellular	61.66	58.87
CDY41770	Canola	endoplasmic reticulum, vacuole	60.47	58.85
CDY12405	Canola	plasma membrane	59.68	51.54
CDY41240	Canola	extracellular, plasma membrane	58.89	39.21
CDY15079	Canola	cytosol, plasma membrane, plastid	45.45	33.92
CDY10852	Canola	plasma membrane	49.8	33.16
HORVU3Hr1G109450.1	Barley	endoplasmic reticulum	15.41	30.71
CDY68211	Canola	endoplasmic reticulum, extracellular, vacuole	30.04	29.8
CDY52060	Canola	endoplasmic reticulum, extracellular, vacuole	30.04	29.8
CDY57408	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.64	29.41
CDY10860	Canola	endoplasmic reticulum, plasma membrane	31.62	28.27
CDX85345	Canola	plasma membrane	28.06	27.2
CDX86299	Canola	extracellular	28.06	27.2
Os07t0537300-00	Rice	extracellular	29.64	26.04
KRG91214	Soybean	plasma membrane	34.39	25.97
TraesCS3B01G024400.1	Wheat	extracellular	28.46	25.62
TraesCS3D01G025300.1	Wheat	extracellular, plasma membrane	28.06	25.45
KRG91211	Soybean	plasma membrane	33.2	25.0
Os07t0537200-01	Rice	plasma membrane	28.06	24.4
TraesCS2B01G242200.1	Wheat	endoplasmic reticulum, plasma membrane	28.85	23.93
VIT_02s0087g01010.t01	Wine grape	plasma membrane	41.5	23.54
TraesCSU01G233400.1	Wheat	extracellular	25.69	23.3
HORVU3Hr1G002810.2	Barley	extracellular	28.06	22.68
TraesCS2D01G222200.1	Wheat	endoplasmic reticulum, plasma membrane	26.48	22.48
HORVU2Hr1G125180.2	Barley	extracellular	24.9	22.11
TraesCS2A01G216800.1	Wheat	endoplasmic reticulum, vacuole	28.46	21.88
Zm00001d021693_P001	Maize	endoplasmic reticulum, plasma membrane	24.51	21.6
CDY39159	Canola	plasma membrane	45.06	18.94
TraesCS1D01G431100.1	Wheat	extracellular	22.92	18.65
Os07t0540600-00	Rice	endoplasmic reticulum, plasma membrane	26.88	18.18
TraesCS2B01G242400.1	Wheat	plastid	26.48	17.82
TraesCS3D01G501300.3	Wheat	plasma membrane	28.06	17.49
Os10t0329900-00	Rice	endoplasmic reticulum, plasma membrane	27.67	17.33
TraesCS2D01G222500.1	Wheat	vacuole	26.48	16.3
Zm00001d040823_P001	Maize	plasma membrane	30.43	15.59
HORVU3Hr1G109380.8	Barley	mitochondrion	14.23	14.63
TraesCS3A01G494000.1	Wheat	plasma membrane	27.27	13.48
Zm00001d021683_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	26.88	13.36
Zm00001d030212_P001	Maize	plasma membrane	25.3	12.62
TraesCS3D01G501200.1	Wheat	plasma membrane	28.85	10.49

Protein Annotations

EnsemblPlants:CDY47325	EnsemblPlantsGene:GSBRNA2T00087175001	Gene3D:3.30.430.20	InterPro:GNK2	InterPro:GNK2_sf	InterPro:IPR002902
InterPro:IPR038408	PANTHER:PTHR32099	PANTHER:PTHR32099:SF13	PFAM:PF01657	PFscan:PS51473	ProteinID:CDY47325
ProteinID:CDY47325.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EE6D09	UniProt:A0A078I8S3	MapMan:35.1

Description

BnaCnng14620DBnaCnng14620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8S3]

Coordinates

chrLK032709:+:79389..80433

Molecular Weight (calculated)

28250.2 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.230

Length

253 amino acids

Sequence
(BLAST)

001: MSSWVTFFFL SFFSVFTCIK VSSQDLSLLY NFCPNTTTYS RNSTYYTNLK TLLASFSSPN SSYSTGFQSG KAGQAPDTVT GLFLCRGDVS QESCRNCVAF
101: AVNESLTRCP NQSEAVLYYD ECTLRYSHRN ILSTLRTDGG YTLPNLNNIP RNQQDRFRDL VLSTLNQAAA KAVASSRKFD ARKVNFTALQ SLYGLVQCTP
201: DLTGQDCLRC LQTSINQLPT ERIGARLLLP SCGSRYELYP FYNESAVTTQ TTT

Best Arabidopsis Sequence Match ( AT4G23170.1 )
(BLAST)

001: MSSLISFIFL FLFSFLTSFK ASAQDPFYLN HYCPNTTTYS RFSTYSTNLR TLLSSFASRN ASYSTGFQNV TVGQTPDLVT GLFLCRGDLS PEVCSNCVAF
101: SVDEALTRCP SQREAVFYYE ECILRYSDKN ILSTAITNEG EFILSNTNTI SPNQSQINQF IVLVQSNMNQ AAMEAANSSR KFSTIKTELT ELQTLYGLVQ
201: CTPDLTSQDC LRCLTRSINR MPLSRIGARQ FWPSCNSRYE LYSFYNETTI GTPSPPPPPS PSRAN

Arabidopsis Description

CRK9Putative cysteine-rich receptor-like protein kinase 9 [Source:UniProtKB/Swiss-Prot;Acc:O65469]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.