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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • plastid 4
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 3
  • plasma membrane 4
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:plastid
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23170.1 CDX73678 AT3G51920.1 17360592
AT4G23170.1 CDX95314 AT3G51920.1 17360592
AT4G23170.1 CDY23174 AT3G51920.1 17360592
AT4G23170.1 CDY06478 AT4G14640.1 17360592
AT4G23170.1 CDX92401 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41240 Canola extracellular, plasma membrane 61.48 45.79
CDY10852 Canola plasma membrane 50.88 37.89
AT4G23170.1 Thale cress extracellular 31.8 33.96
CDY15079 Canola cytosol, plasma membrane, plastid 39.22 32.74
CDY41770 Canola endoplasmic reticulum, vacuole 30.04 32.69
CDY01121 Canola extracellular 28.62 32.14
CDY47325 Canola endoplasmic reticulum, extracellular, vacuole 28.27 31.62
CDY12405 Canola plasma membrane 29.68 28.67
TraesCS2B01G242400.1 Wheat plastid 24.73 18.62
CDY39159 Canola plasma membrane 38.52 18.11
CDY52060 Canola endoplasmic reticulum, extracellular, vacuole 15.19 16.86
CDY68211 Canola endoplasmic reticulum, extracellular, vacuole 15.19 16.86
CDY57408 Canola endoplasmic reticulum, plasma membrane, vacuole 14.49 16.08
TraesCS3D01G025300.1 Wheat extracellular, plasma membrane 15.19 15.41
TraesCS3B01G024400.1 Wheat extracellular 15.19 15.3
Os07t0537300-00 Rice extracellular 15.55 15.28
KRG91214 Soybean plasma membrane 18.02 15.22
KRG91211 Soybean plasma membrane 18.02 15.18
TraesCS3D01G501300.3 Wheat plasma membrane 21.2 14.78
VIT_02s0087g01010.t01 Wine grape plasma membrane 22.61 14.35
Os07t0537200-01 Rice plasma membrane 14.49 14.09
TraesCS2D01G222200.1 Wheat endoplasmic reticulum, plasma membrane 14.13 13.42
HORVU3Hr1G002810.2 Barley extracellular 14.84 13.42
TraesCS2D01G222500.1 Wheat vacuole 19.43 13.38
TraesCS2B01G242200.1 Wheat endoplasmic reticulum, plasma membrane 14.13 13.11
HORVU2Hr1G125180.2 Barley extracellular 13.07 12.98
TraesCS2A01G216800.1 Wheat endoplasmic reticulum, vacuole 14.84 12.77
Zm00001d030212_P001 Maize plasma membrane 22.26 12.43
Os07t0540600-00 Rice endoplasmic reticulum, plasma membrane 16.25 12.3
CDX85345 Canola plasma membrane 11.31 12.26
CDX86299 Canola extracellular 11.31 12.26
TraesCSU01G233400.1 Wheat extracellular 12.01 12.19
Zm00001d040823_P001 Maize plasma membrane 21.2 12.15
Zm00001d021693_P001 Maize endoplasmic reticulum, plasma membrane 12.01 11.85
TraesCS3A01G494000.1 Wheat plasma membrane 21.2 11.72
Os10t0329900-00 Rice endoplasmic reticulum, plasma membrane 16.25 11.39
Zm00001d021683_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 20.14 11.2
TraesCS1D01G431100.1 Wheat extracellular 12.01 10.93
TraesCS3D01G501200.1 Wheat plasma membrane 21.55 8.76
HORVU3Hr1G109450.1 Barley endoplasmic reticulum 2.47 5.51
HORVU3Hr1G109380.8 Barley mitochondrion 3.89 4.47
Protein Annotations
Gene3D:3.30.200.20Gene3D:3.30.430.20MapMan:35.1GO:A0A078F8S0UniProt:A0A078F8S0EnsemblPlants:CDY10860
ProteinID:CDY10860ProteinID:CDY10860.1InterPro:GNK2InterPro:GNK2_sfGO:GO:0005575GO:GO:0016020
GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00048748001InterPro:IPR002902InterPro:IPR038408InterPro:Kinase-like_dom_sfPFAM:PF01657
PFscan:PS51473PANTHER:PTHR27002PANTHER:PTHR27002:SF181SUPFAM:SSF56112SignalP:SignalP-TMTMHMM:TMhelix
UniParc:UPI0004EF188ESEG:seg::::
Description
BnaC01g14750DBnaC01g14750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8S0]
Coordinates
chrLK032007:+:422751..424136
Molecular Weight (calculated)
31509.7 Da
IEP (calculated)
8.760
GRAVY (calculated)
-0.039
Length
283 amino acids
Sequence
(BLAST)
001: MRNTTQASPV MSSPTTFVIL FLFSFLTSFR ASAQDPTYLR RLCRKCNLIS VSERERDDSL LGRVYAKIEF KDLVLSPVNQ TATMASNSSQ KFDARKAYFN
101: AFQDLYALVQ CTPDLTSQEC FHCLNWTINR LPIHRVGGRI FVPSCNSRFE LYSFYNESAV PTSQQQLDSA PPPPQQISIS SPFPGGGGNS TVVIIAVVVT
201: ISVIFLLLVA VYTFRAKREK TVYETEPLAV VSTDGEDITT AGSLQFDFKA IKAATDKFSE GNKLGQGGFG LVYKKAHYFL WAH
Best Arabidopsis Sequence Match ( AT3G45860.1 )
(BLAST)
001: MSFFWLFPFL LHLSFADSLS PLSAPVQNFI HLNHSCPSSI LTYSRNSTYF TNLKTLLSSL SSRNASYSTG FQTATAGQAP DRVTGLFLCR GDVSQEVCRN
101: CVAFSVKETL YWCPYNKEVV LYYDECMLRY SHRNILSTVT YDGSAILLNG ANISSSNQNQ VDEFRDLVSS TLNLAAVEAA NSSKKFYTRK VITPQPLYLL
201: VQCTPDLTRQ DCLRCLQKSI KGMSLYRIGG RFFYPSCNSR YENYSFYNET ATRSSSPPSL PPRSTPQQQL KLAPPPLISE RGKGRNSSVI IVVVVPIIAL
301: LLLFVAFFSL RAKKTRTNYE REPLTEESDD ITTAGSLQFD FKAIEAATNK FCETNKLGQG GFGEVYKGIF PSGVQVAVKR LSKTSGQGER EFANEVIVVA
401: KLQHRNLVRL LGFCLERDER ILVYEFVPNK SLDYFIFDST MQSLLDWTRR YKIIGGIARG ILYLHQDSRL TIIHRDLKAG NILLGDDMNA KIADFGMARI
501: FGMDQTEANT RRIVGTYGYM SPEYAMYGQF SMKSDVYSFG VLVLEIISGK KNSNVYQMDG TSAGNLVTYT WRLWSNGSPL ELVDPSFRDN YRINEVSRCI
601: HIALLCVQEE AEDRPTMSAI VQMLTTSSIA LAVPQRPGFF FRSSKHEQVG LVDRLSINTS ALCSVDDASI TNVTPR
Arabidopsis Description
CRK4Cysteine-rich receptor-like protein kinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZU4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.