CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53450.1	CDX73678	AT3G51920.1	17360592
AT5G53450.1	CDX95314	AT3G51920.1	17360592
AT5G53450.1	CDY23174	AT3G51920.1	17360592
AT5G53450.1	CDY06478	AT4G14640.1	17360592
AT5G53450.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14380	Canola	plastid	97.89	97.75
AT5G53450.1	Thale cress	plastid	89.32	88.66
VIT_16s0098g00330.t01	Wine grape	plastid	67.52	67.01
KRH53484	Soybean	plastid	65.86	65.08
KRH64464	Soybean	plastid	65.71	64.93
Solyc03g083420.2.1	Tomato	cytosol, plastid	61.95	61.49
PGSC0003DMT400023542	Potato	cytosol	61.65	61.19
EES01191	Sorghum	plastid	54.29	55.8
TraesCS3A01G237400.1	Wheat	plastid	54.14	55.47
TraesCS3D01G237800.1	Wheat	plastid	53.98	55.32
HORVU3Hr1G059130.8	Barley	plastid	54.14	55.3
GSMUA_Achr3P25130_001	Banana	plastid	55.19	55.02
Os01t0655500-01	Rice	plastid	53.38	54.62
Zm00001d044018_P001	Maize	plastid	20.9	53.26
TraesCS3B01G266000.1	Wheat	plastid	39.25	50.39
Zm00001d044017_P001	Maize	cytosol	33.98	38.97

Protein Annotations

Gene3D:1.10.510.10	MapMan:35.1	GO:A0A078HD69	UniProt:A0A078HD69	EnsemblPlants:CDY35656	ProteinID:CDY35656
ProteinID:CDY35656.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00059049001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
InterPro:PAP/fibrillin_dom	PFAM:PF00069	PFAM:PF04755	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF335
InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	UniParc:UPI0004EBBFC0	SEG:seg	:

Description

BnaC09g29780DBnaC09g29780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD69]

Coordinates

chrLK032357:+:284335..287867

Molecular Weight (calculated)

74537.1 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.256

Length

665 amino acids

Sequence
(BLAST)

001: MALCGVSSTP NLQLLQSARN SSIGLKRNRS LCHPTSSSYR AKPVKLRCSS SSSNVEMEDD VGNGSSSVSV EDESAHVMQF KWNDFKILDR VSIGHGGRAD
101: ELVFEAVVQI PDSPLFNQGV VLRKLNTTHA QRRGRRAIEV LKKLVRRRLL YHSYSMQVHG YISNSLRSDD PYSFTLVHGC HGSFSIRHWL QQSDWLPTLE
201: ATLALDEESF RRVGDDTTGG PAVSRQLRLI RILMRDLLIG VNYLHSHGLA HTELRLENVH ISPVDRHIKV GILGNAADFY GDGPSSSNAY STMDRRQMMI
301: AFDMRCVGFM MAKMVLQELM DPLIFAKLKS FLAKGNDPSS LREFFVTTLN TNSESGNTGV QILDRNWGAG WHLLSSLIAT RPSKRISCLD ALKHPFLCGP
401: RWRVAPSMDI IRWGLGSTAV RISEEYIYSM PQRQRLAHFI ELMEMLNPCP KPNCWLELLP GRWRLLYSTG KHIGLTLRQP STRALIGNVH LTISRASEDS
501: NNTSLSFTSD IGFTAITSKE WPHDKTGARG KLQTLSQFRL VAGKRLYLKE EKKNIGKFSM GEPNAEEGLV EKLGTKKWKK VVPFKEFPSS LPVAKLVSGE
601: IEVTMNMADR IESPGNVIGE VRKQIPQEMF DLSKLVCGTY IDSRLLVLRC VNGSALLFTR SSFGP

Best Arabidopsis Sequence Match ( AT5G53450.1 )
(BLAST)

001: MALCGVCSTP NLPNLQVFRS VRNSSIGYKR NHSLWQLRSS SFRAKSVIFH CSSSLRQSPS NVEEIDDNPS VSLEDESAHV MQFKWSDFRI LDRVSIGHGG
101: RADELVFEAI VQVPDSPLFN QGVVLRKLNT TRAQRRGRRA IEVFKKLVRR RLLYHSYSMQ VHGYITNNLS DDQYSFTLVH GCHGSFSIRH WLQQSDWIPT
201: LEATLALDEE SFRRVGDDTT GGPAVSRQLR LIRTLMRDIL IGVNYLHSHG LAHTELRLEN VHISPVDRHI KVGILGNAAD FNGDVPSTSN AYSTMDRRQM
301: MIAFDMRCVG FMMAKMVLQE LMDPLIFAKL KSFLAKGNDP SSLREFFVTT LNTNSESGNT GVQILDRNWG AGWHLLSLLI ATRPSERISC LDALKHPFLC
401: GPRWRVAPSM DIIRWGLGST AVKISEEYIY RMPQRQRLAH FIGLMEMLNP YPKPNCWLEL LPGRWRLLYS TGKHIGLTLR QPSTRALIGN VHLTITRASE
501: SINNTSLSFT SDIRFTAITS KDWPHNKIGA AGKLQTLSQF RLIAGKRLYL KEEKKNIGKF SMGEPDAEEG LAEKLETEKW KKVVPFKEFP SSLPVAKLVS
601: GEIEVTMNMN DHIDSPGSVI GEVRKQIPPE MFDLSKLVCG TYIDSRLLVL RCVNGSALLF TRSSLDHKSM

Arabidopsis Description

PAP14Probable plastid-lipid-associated protein 14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LV04]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.