Factsheet for VIT_16s0098g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53450.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT5G53450.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT5G53450.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT5G53450.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT5G53450.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT5G53450.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT5G53450.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53484	Soybean	plastid	71.19	70.88
KRH64464	Soybean	plastid	70.3	69.99
CDY35656	Canola	plastid	67.01	67.52
CDY14380	Canola	plastid	67.01	67.42
Bra003055.1-P	Field mustard	plastid	66.27	66.67
Solyc03g083420.2.1	Tomato	cytosol, plastid	66.12	66.12
PGSC0003DMT400023542	Potato	cytosol	65.97	65.97
AT5G53450.1	Thale cress	plastid	65.37	65.37
GSMUA_Achr3P25130_001	Banana	plastid	60.75	61.02
HORVU3Hr1G059130.8	Barley	plastid	58.51	60.22
TraesCS3A01G237400.1	Wheat	plastid	58.21	60.09
Os01t0655500-01	Rice	plastid	58.06	59.85
TraesCS3D01G237800.1	Wheat	plastid	57.91	59.78
EES01191	Sorghum	plastid	57.46	59.51
Zm00001d044018_P001	Maize	plastid	21.94	56.32
TraesCS3B01G266000.1	Wheat	plastid	42.99	55.6
Zm00001d044017_P001	Maize	cytosol	36.87	42.59

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100248606	wikigene:100248606	MapMan:35.1	EMBL:AM486250	ProteinID:CAN75419
ProteinID:CAN75419.1	ProteinID:CBI23141	ProteinID:CBI23141.3	UniProt:E0CVI0	EMBL:FN595247	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468
GO:GO:0007049	GO:GO:0007346	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100248606
wikigene:LOC100248606	InterPro:PAP/fibrillin_dom	PFAM:PF00069	PFAM:PF04755	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF335	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	UniParc:UPI00015CC385	ArrayExpress:VIT_16s0098g00330
EnsemblPlantsGene:VIT_16s0098g00330	EnsemblPlants:VIT_16s0098g00330.t01	unigene:Vvi.6126	RefSeq:XP_002268087	RefSeq:XP_002268087.1	RefSeq:XP_010662982.1
RefSeq:XP_010662983.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:-:20727472..20733698

Molecular Weight (calculated)

75554.8 Da

IEP (calculated)

10.439

GRAVY (calculated)

-0.224

Length

670 amino acids

Sequence
(BLAST)

001: MALCGTGLKL SLESVGVGYY SKNSSTRLLR SSGTSLNQRK HSSLQQKCWR VRCSLSRKST LPMESEDNVQ SVSSVLVEEE LEHVIKFKIS DFKISDRVSV
101: GLGGRADEVV FEATVKDSQS PLNDTRVVLR QLISAQAKRR GKRAIEVLKR LVRRRLMYHS YSMQVHGYVP SPMIGDGGSF TLVHGYHGSF SLRHWLQLSD
201: WLPTLEATLA LDEESVRRVG DDTVGGPAVS RQLRLIRILM RDLLIGVNYL HSHGLAHTEL RLENVHICPV DRHIKVGILG NAADFYESSQ NSSTLDSNME
301: RRQMMIAFDM RCVGFMMAKM VLRELMDPTI FAKFKSFLTK GNDPSCLREF LLQILNRNSS SGNAGLQILD RNWGAGWNLL SSLLATKSSK RISCLDALRH
401: PFLCGPRWRV SPSMDIIRWG LGSTAVRISE EYIYRLPQRT RLAHFIELME MLNPYSKPRN WLELLPGKWR LLYSTGRHIG LTLRQPSARV LIGDVHLTVS
501: RTSTLNTNLS LTSDIGFTVM VNQNWPHDKS GTTGKLQVNA MFRLTAGRRL YLKEDKTTGK FPSPSSTSQN SVIRKFSGRK WRKAIPFKEF PSTLPVAKFT
601: PHDVELTMSL DDPLSTNVDI AKTVVREVRT QVPPEIFDLS KIVCGTYLDP RLLVLRGVSG SALLFTRSCE

Best Arabidopsis Sequence Match ( AT5G53450.1 )
(BLAST)

001: MALCGVCSTP NLPNLQVFRS VRNSSIGYKR NHSLWQLRSS SFRAKSVIFH CSSSLRQSPS NVEEIDDNPS VSLEDESAHV MQFKWSDFRI LDRVSIGHGG
101: RADELVFEAI VQVPDSPLFN QGVVLRKLNT TRAQRRGRRA IEVFKKLVRR RLLYHSYSMQ VHGYITNNLS DDQYSFTLVH GCHGSFSIRH WLQQSDWIPT
201: LEATLALDEE SFRRVGDDTT GGPAVSRQLR LIRTLMRDIL IGVNYLHSHG LAHTELRLEN VHISPVDRHI KVGILGNAAD FNGDVPSTSN AYSTMDRRQM
301: MIAFDMRCVG FMMAKMVLQE LMDPLIFAKL KSFLAKGNDP SSLREFFVTT LNTNSESGNT GVQILDRNWG AGWHLLSLLI ATRPSERISC LDALKHPFLC
401: GPRWRVAPSM DIIRWGLGST AVKISEEYIY RMPQRQRLAH FIGLMEMLNP YPKPNCWLEL LPGRWRLLYS TGKHIGLTLR QPSTRALIGN VHLTITRASE
501: SINNTSLSFT SDIRFTAITS KDWPHNKIGA AGKLQTLSQF RLIAGKRLYL KEEKKNIGKF SMGEPDAEEG LAEKLETEKW KKVVPFKEFP SSLPVAKLVS
601: GEIEVTMNMN DHIDSPGSVI GEVRKQIPPE MFDLSKLVCG TYIDSRLLVL RCVNGSALLF TRSSLDHKSM

Arabidopsis Description

PAP14Probable plastid-lipid-associated protein 14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LV04]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.