CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53450.1	KRG89812	AT2G41090.1	17360592
AT5G53450.1	KRG94975	AT2G41090.1	17360592
AT5G53450.1	KRH18664	AT2G41090.1	17360592
AT5G53450.1	KRG89812	AT2G41100.1	17360592
AT5G53450.1	KRG94975	AT2G41100.1	17360592
AT5G53450.1	KRH18664	AT2G41100.1	17360592
AT5G53450.1	KRH31638	AT4G14640.1	17360592
AT5G53450.1	KRH69070	AT4G14640.1	17360592
AT5G53450.1	KRG89812	AT5G21274.1	17360592
AT5G53450.1	KRG94975	AT5G21274.1	17360592
AT5G53450.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64464	Soybean	plastid	94.5	94.5
VIT_16s0098g00330.t01	Wine grape	plastid	70.88	71.19
CDY14380	Canola	plastid	65.23	65.92
CDY35656	Canola	plastid	65.08	65.86
Bra003055.1-P	Field mustard	plastid	64.64	65.32
AT5G53450.1	Thale cress	plastid	64.64	64.93
Solyc03g083420.2.1	Tomato	cytosol, plastid	61.66	61.94
PGSC0003DMT400023542	Potato	cytosol	60.48	60.75
GSMUA_Achr3P25130_001	Banana	plastid	58.4	58.92
Os01t0655500-01	Rice	plastid	54.83	56.77
EES01191	Sorghum	plastid	54.38	56.57
TraesCS3A01G237400.1	Wheat	plastid	53.94	55.93
TraesCS3D01G237800.1	Wheat	plastid	53.79	55.78
HORVU3Hr1G059130.8	Barley	plastid	53.94	55.76
Zm00001d044018_P001	Maize	plastid	21.4	55.17
TraesCS3B01G266000.1	Wheat	plastid	39.38	51.16
Zm00001d044017_P001	Maize	cytosol	34.18	39.66

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100810786	MapMan:35.1	EMBL:ACUP02003467	EnsemblPlantsGene:GLYMA_06G127700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468
GO:GO:0007049	GO:GO:0007346	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	UniProt:I1KAR3	InterPro:IPR000719	ProteinID:KRH53481.1
ProteinID:KRH53482.1	ProteinID:KRH53483.1	EnsemblPlants:KRH53484	ProteinID:KRH53484	ProteinID:KRH53484.1	InterPro:Kinase-like_dom_sf
InterPro:PAP/fibrillin_dom	PFAM:PF04755	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF335	InterPro:Prot_kinase_dom
SMART:SM00220	SUPFAM:SSF56112	UniParc:UPI00023395F0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:10486250..10492229

Molecular Weight (calculated)

75599.1 Da

IEP (calculated)

10.184

GRAVY (calculated)

-0.196

Length

673 amino acids

Sequence
(BLAST)

001: MALCGTGPNP IPGSYSAQNL STKLIVPALL PFTGQFYNLV RRKRKGVCCS SLRNAASASS KESQEDAPST LSVYLEEETD HVIRFKMSDF KILDTVSVGL
101: GGRPDEVIFE GMVKDSCSPL CNTRVVLRQL SSAQAQRRGK RAIEVLKKLV RRKLLYHSYS MQVHGYISLP ASGVSGSFIL VHGYHGSFSL RHWLQQSDWL
201: PTLEATLALD EESVRKVGED STGGPAVSRQ LRLIRILMRD LLIGVNYLHS HGLAHTELRL ENVHISPIDR HIKVGILGNA ADFYKDGSNG SSLDNLDRRQ
301: MMIAFDMRCV GFIMAKMVMR ELMDPLIFAK FKLFLKKGYD PSCLREFMLE ILGRSSPYGN AGLQILDRNW GAGWHLLSLL LATKPSQRIS CLDALRHPFL
401: CGPRWRVVPS MDIIRWGLGS TAMRISEEYI YRQPQRSRLA HFIDLMEMLN PHPKPRNWLE LLPGKWRLLY STGKHVGLTL RQPPLRVIVG DVHLTVTRES
501: KLKANLSFNS DTGFSVMIGQ DWPHDKAGKS GRLQVNSSFT LRSGRLLYLK QDKTTEKFFF GPSSNVEALA QKFKGKKWRK VVPFEELPSS LPAAKLASGD
601: IDVRMNLDDP LNQNVDTARN VLQELRTQLP PEIFDLSKLV CGTYVDSRML VLRGVSGSAL LFTRSFVDRN GSS

Best Arabidopsis Sequence Match ( AT5G53450.3 )
(BLAST)

001: MALCGVCSTP NLPNLQVFRS VRNSSIGYKR NHSLWQLRSS SFRAKSVIFH CSSSLRQSPS NVEEIDDNPS VSLEDESAHV MQFKWSDFRI LDRVSIGHGG
101: RADELVFEAI VQVPDSPLFN QGVVLRKLNT TRAQRRGRRA IEVFKKLVRR RLLYHSYSMQ VHGYITNNLS DDQYSFTLVH GCHGSFSIRH WLQQSDWIPT
201: LEATLALDEE SFRRVGDDTT GGPAVSRQLR LIRTLMRDIL IGVNYLHSHG LAHTELRLEN VHISPVDRHI KVGILGNAAD FNGDVPSTSN AYSTMDRRQM
301: MIAFDMRCVG FMMAKMVLQE LMDPLIFAKL KSFLAKGNDP SSLREFFVTT LNTNSESGNT GVQILDRNWG AGWHLLSLLI ATRPSERISC LDALKHPFLC
401: GPRWRVAPSM DIIRWGLGST AVKISEEYIY RMPQRQRLAH FIGLMEMLNP YPKPNV

Arabidopsis Description

PAP14Probable plastid-lipid-associated protein 14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LV04]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.