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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • golgi 5
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G68380.1 CDX73678 AT3G51920.1 17360592
AT1G68380.1 CDX95314 AT3G51920.1 17360592
AT1G68380.1 CDY23174 AT3G51920.1 17360592
AT1G68380.1 CDX92401 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96026 Canola golgi 88.74 83.59
AT1G68380.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 66.76 63.52
CDX96025 Canola golgi, vacuole 57.64 51.68
CDY59035 Canola golgi 57.64 51.07
CDY44904 Canola golgi 56.03 50.98
CDX81507 Canola golgi 55.76 50.73
CDX80552 Canola cytosol 17.43 42.48
CDX73016 Canola mitochondrion 35.12 37.75
CDY31036 Canola golgi 38.07 37.67
CDX94911 Canola golgi 38.61 37.4
CDX78440 Canola cytosol 32.17 37.15
CDX93443 Canola golgi 38.07 36.98
CDY20644 Canola golgi 38.34 36.67
CDX87842 Canola golgi 36.73 35.22
CDY51451 Canola golgi 35.92 35.17
CDX89388 Canola cytosol 21.45 35.09
CDX69735 Canola golgi 35.92 34.72
CDY43927 Canola golgi 36.19 34.7
CDY56916 Canola cytosol, golgi, plasma membrane, plastid 35.39 34.65
CDX97141 Canola golgi 35.66 34.46
CDX97139 Canola golgi 35.66 34.46
CDY19328 Canola golgi, mitochondrion 34.85 34.39
CDY26504 Canola cytosol 13.94 34.21
CDX70417 Canola cytosol 27.35 34.0
CDX78439 Canola golgi 35.92 33.42
CDX88209 Canola golgi 30.83 32.86
CDX70676 Canola cytosol, golgi, nucleus 35.12 32.59
CDX97140 Canola golgi 35.39 32.2
CDX78674 Canola cytosol, golgi, plasma membrane 34.32 31.76
CDX69465 Canola golgi 33.78 31.11
CDY20597 Canola golgi 28.15 30.88
CDX70416 Canola golgi 35.66 30.43
CDY49466 Canola cytosol 19.03 27.63
CDY38285 Canola golgi 27.61 26.48
CDY28259 Canola golgi 26.54 26.33
CDX68738 Canola golgi 26.54 26.33
CDY25922 Canola golgi 27.35 26.22
CDX92736 Canola mitochondrion 26.27 25.86
CDY03552 Canola golgi, mitochondrion 27.61 25.69
CDY42774 Canola mitochondrion 26.01 25.59
CDY11878 Canola golgi 26.54 25.45
CDX88613 Canola golgi 26.54 25.45
CDX94406 Canola golgi 25.74 25.33
CDY46724 Canola mitochondrion 27.35 25.31
CDY66853 Canola mitochondrion 26.81 25.25
CDY09869 Canola mitochondrion 24.66 25.14
CDY30178 Canola mitochondrion 27.08 25.12
CDY03361 Canola mitochondrion 26.54 25.06
CDX83505 Canola mitochondrion 26.54 24.87
CDY12850 Canola mitochondrion 26.54 24.87
CDX69574 Canola mitochondrion 24.4 24.86
CDY01412 Canola mitochondrion 26.54 24.81
CDY21023 Canola golgi 24.93 24.73
CDY24895 Canola mitochondrion 24.66 24.66
CDY31228 Canola golgi 24.4 24.59
CDY08638 Canola mitochondrion 24.93 24.54
CDY34605 Canola golgi 24.66 24.34
CDY51089 Canola golgi, mitochondrion 25.74 24.3
CDX82625 Canola mitochondrion 25.47 24.05
CDY57290 Canola cytosol 21.98 23.7
CDY66012 Canola mitochondrion 21.98 22.47
CDY66259 Canola cytosol 23.59 20.47
CDY14193 Canola mitochondrion 27.61 19.66
CDX97918 Canola golgi 32.44 19.18
CDX73017 Canola cytosol 0.54 14.29
Protein Annotations
EnsemblPlants:CDY70337EnsemblPlantsGene:GSBRNA2T00098192001GO:A0A078JXJ0GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0008375GO:GO:0016020GO:GO:0016021GO:GO:0016740InterPro:Glyco_trans_14PANTHER:PTHR31042
PANTHER:PTHR31042:SF56PFAM:PF02485ProteinID:CDY70337ProteinID:CDY70337.1SEG:segTMHMM:TMhelix
UniParc:UPI0004EE4466UniProt:A0A078JXJ0MapMan:35.1:::
Description
BnaCnng67850DBnaCnng67850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXJ0]
Coordinates
chrLK041825:-:891..2527
Molecular Weight (calculated)
43553.6 Da
IEP (calculated)
9.687
GRAVY (calculated)
-0.273
Length
373 amino acids
Sequence
(BLAST)
001: MPTQKDRNSS STSLFLVIKL LNPLLHHFLN LLFYFFILCL GVVVGIIVHS SLEASFLPYY PTVQSISQLV LVTSPPPPTS SPLPQNYEIE MFLRPPKINI
101: MHNMEDNELF WRASMDPKIP TRPRYISSSP YPFSRTPKSP CPKARCFMAA AFQARPASNP IRVDWANANM VDAERRLLAN ALLDINNERF LLFSEACIPL
201: FNFTTIYSYL INSTQTHVDS YDLPFGRVRY NRRMYPHIHM HHWRKGSQWF ELDRPMALET VSDTFYWPIF KAYCRCPDEH YLPTLLNLTP SLGSRNSNRT
301: LTWTDWGKRR AHPRSFGGPE VNVEFLKWLR RSDKEYCEHK GVDKTRPCFL FARKFSSNAL DKLLRFASTV MYF
Best Arabidopsis Sequence Match ( AT1G68380.1 )
(BLAST)
001: MPTQKDQNSP LSQVIELLKK LLHHFHNLLL YFFILWIGVI VGIIVYPSLQ GLSSPSSLTI QSVSQLFFVT PPPPILSPSF QDNGLDMFLI PLKNIMHDME
101: DNELLWRASM DPKIRDYPYP RIPKVAFMFL TWGPLPLAPL WERFFRGHEG LFTIYVHTNS SYDEFMPQDS VFYGRRIPSK RVDWGNANMV EAERRLLANA
201: LLDINNERFI LLSESCIPLF NFSTVYSFLI DSTLTHVDSY DLTIGRVRYD RRMYPHIRMH QWRKGSQWFE LDRAMALEVV SDTFYWPIFK AYSRCPDEHY
301: IPTLLNMRPS LGLRNANRTL TWTDWSKRRA HPRLFGEWEV NVEFLEWLRM KSVGDCKKNG ENKMRLCFLF ARKFSSTALD ELLRLASIVM YF
Arabidopsis Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C3]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.