CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78674	Canola	cytosol, golgi, plasma membrane	92.79	92.56
CDX69465	Canola	golgi	84.08	83.46
AT5G16170.1	Thale cress	golgi	85.32	83.45
VIT_14s0006g02700.t01	Wine grape	cytosol	50.0	67.91
CDY26504	Canola	cytosol	25.37	67.11
KRH01729	Soybean	cytosol	43.28	57.81
KRH46947	Soybean	cytosol	43.28	57.81
CDX80552	Canola	cytosol	18.91	49.67
CDY19328	Canola	golgi, mitochondrion	45.52	48.41
CDX78440	Canola	cytosol	37.81	47.06
CDX70417	Canola	cytosol	35.07	47.0
CDX97141	Canola	golgi	44.03	45.85
CDX97139	Canola	golgi	43.53	45.34
CDY31036	Canola	golgi	42.29	45.09
CDX69735	Canola	golgi	43.03	44.82
CDY20597	Canola	golgi	37.56	44.41
CDX73016	Canola	mitochondrion	37.56	43.52
CDX93443	Canola	golgi	41.54	43.49
CDY20644	Canola	golgi	42.04	43.33
CDX81507	Canola	golgi	44.03	43.17
CDY44904	Canola	golgi	44.03	43.17
CDX94911	Canola	golgi	41.29	43.12
CDY51451	Canola	golgi	40.8	43.04
CDX78439	Canola	golgi	42.79	42.89
CDX96025	Canola	golgi, vacuole	44.28	42.79
CDY59035	Canola	golgi	44.28	42.28
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	40.05	42.26
CDX87842	Canola	golgi	40.8	42.16
CDY43927	Canola	golgi	40.8	42.16
CDX97140	Canola	golgi	42.29	41.46
CDX96026	Canola	golgi	40.8	41.41
CDX88209	Canola	golgi	34.58	39.71
CDX89388	Canola	cytosol	22.39	39.47
CDX70416	Canola	golgi	42.79	39.36
CDY49466	Canola	cytosol	23.38	36.58
CDY70337	Canola	golgi	32.59	35.12
CDX92736	Canola	mitochondrion	32.59	34.56
CDY25922	Canola	golgi	33.08	34.19
CDY38285	Canola	golgi	33.08	34.19
CDY28259	Canola	golgi	31.84	34.04
CDX68738	Canola	golgi	31.84	34.04
CDY46724	Canola	mitochondrion	34.08	33.99
CDX88613	Canola	golgi	32.84	33.93
CDY11878	Canola	golgi	32.84	33.93
CDY30178	Canola	mitochondrion	33.83	33.83
CDY42774	Canola	mitochondrion	31.84	33.77
CDY03552	Canola	golgi, mitochondrion	33.08	33.17
CDX94406	Canola	golgi	30.85	32.72
CDX82625	Canola	mitochondrion	31.84	32.41
CDX69574	Canola	mitochondrion	29.1	31.97
CDY51089	Canola	golgi, mitochondrion	31.34	31.9
CDY31228	Canola	golgi	29.35	31.89
CDY09869	Canola	mitochondrion	28.86	31.69
CDX83505	Canola	mitochondrion	31.09	31.41
CDY12850	Canola	mitochondrion	31.09	31.41
CDY03361	Canola	mitochondrion	30.85	31.39
CDY01412	Canola	mitochondrion	31.09	31.33
CDY66853	Canola	mitochondrion	30.85	31.31
CDY21023	Canola	golgi	29.1	31.12
CDY34605	Canola	golgi	29.1	30.95
CDY08638	Canola	mitochondrion	29.1	30.87
CDY24895	Canola	mitochondrion	28.61	30.83
CDY57290	Canola	cytosol	25.87	30.06
CDY66012	Canola	mitochondrion	26.37	29.04
CDX97918	Canola	golgi	43.78	27.89
CDY14193	Canola	mitochondrion	33.58	25.76
CDY66259	Canola	cytosol	25.37	23.72
CDX73017	Canola	cytosol	0.5	14.29

Protein Annotations

EnsemblPlants:CDX70676	EnsemblPlantsGene:GSBRNA2T00140534001	GO:A0A078C148	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF27
PFAM:PF02485	ProteinID:CDX70676	ProteinID:CDX70676.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EBDFC3
MapMan:35.1	:	:	:	:	:

Description

BnaC03g07600D

Coordinates

chrLK031791:+:1496200..1497712

Molecular Weight (calculated)

46431.3 Da

IEP (calculated)

7.715

GRAVY (calculated)

-0.372

Length

402 amino acids

Sequence
(BLAST)

001: MGTNDQKSKK EEEHPMISKP SRLVILQKGY HLLGSLVFIT GFSIGLVLCL QLKSLHMSTS KTQQQPLWST LLFNHTTTVE TKQELQLQVL QHNMSDQELF
101: TRVSSLSSSS SSWFGWRHNN DEKMGVKVAF MFLTGRGLPL ASLWDKFFEG HAGFYSIYVH TNPSFQDHYP ETSVFYSRRI PSQAVYWGTS SMVDAERRLL
201: ANALLDESNQ RFVLLSDSCI PLYNFTTIYD YLTGTNLSFI GSFDDPRKSG RGRYNPQMHP QINITHWRKG SQWFETTREL ALHIISDTVY YKIFDQHCKP
301: PCYMDEHYIP TLVHMLHGEM SSNRTLTWVD WSKAGPHPGR FIWPDITDEF LNRIRFTDEC AYYGHDGDNI TTSKCFLFAR KFTKETLEPL LRISPAVLGF
401: GP

Best Arabidopsis Sequence Match ( AT5G16170.1 )
(BLAST)

001: MSISDHKSKK EEEQYPMITK PLRLILLQKG SYVLSSLFFV FGFSVGLFLC LQLKAVHMST TTTQRQPLWS TLLFNHTVHT TEMDIKQELQ LQVLQHNMSD
101: QELFTKASSL SSPTSSLSSS SWLGRRHNND GKMAVKVAFM FMTGGRLPLA GLWEKFFEGH EGFYSIYVHT NPSFQDSFPE TSVFYSRRIP SQPVYWGTSS
201: MVDAEKRLLA NALLDESNQR FVLLSDSCIP LYNFTTIYDY LTGTNLSFIG SFDDPRKSGR GRYNHTMYPH INITHWRKGS QWFETTRELA LHIIEDTVYY
301: KIFDQHCKPP CYMDEHYIPT LVHMLHGEMS ANRTLTWVDW SKAGPHPGRF IWPDITDEFL NRIRFKEECV YFGRGGENVT TSKCFLFARK FTAETLEPLL
401: RISPIVLGFG P

Arabidopsis Description

At5g16170 [Source:UniProtKB/TrEMBL;Acc:Q4V3A2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.