Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89388 | Canola | cytosol | 46.53 | 70.61 |
| CDX92736 | Canola | mitochondrion | 75.72 | 69.13 |
| CDY42774 | Canola | mitochondrion | 75.43 | 68.87 |
| CDX94406 | Canola | golgi | 73.12 | 66.75 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 71.97 | 64.01 |
| CDY49466 | Canola | cytosol | 46.82 | 63.03 |
| CDY66012 | Canola | mitochondrion | 62.14 | 58.9 |
| CDY38285 | Canola | golgi | 63.01 | 56.04 |
| CDY25922 | Canola | golgi | 62.43 | 55.53 |
| CDX88613 | Canola | golgi | 62.43 | 55.53 |
| CDY11878 | Canola | golgi | 62.14 | 55.27 |
| CDY30178 | Canola | mitochondrion | 52.6 | 45.27 |
| CDY46724 | Canola | mitochondrion | 52.6 | 45.16 |
| CDY03552 | Canola | golgi, mitochondrion | 51.45 | 44.39 |
| HORVU2Hr1G100480.3 | Barley | cytosol | 41.62 | 44.31 |
| CDY03361 | Canola | mitochondrion | 50.58 | 44.3 |
| CDX83505 | Canola | mitochondrion | 50.29 | 43.72 |
| CDY12850 | Canola | mitochondrion | 50.29 | 43.72 |
| CDY66853 | Canola | mitochondrion | 50.0 | 43.69 |
| CDY01412 | Canola | mitochondrion | 50.29 | 43.61 |
| Solyc07g008940.2.1 | Tomato | golgi | 49.13 | 43.26 |
| PGSC0003DMT400073984 | Potato | golgi | 49.13 | 43.26 |
| VIT_11s0103g00490.t01 | Wine grape | golgi, plastid | 50.0 | 42.93 |
| Zm00001d024348_P002 | Maize | mitochondrion | 45.66 | 42.7 |
| KXG24737 | Sorghum | golgi | 45.95 | 41.51 |
| Zm00001d026261_P001 | Maize | golgi, mitochondrion | 45.95 | 41.51 |
| KRH19073 | Soybean | golgi | 47.11 | 41.48 |
| CDY51089 | Canola | golgi, mitochondrion | 47.11 | 41.27 |
| CDX82625 | Canola | mitochondrion | 47.11 | 41.27 |
| EES12818 | Sorghum | golgi | 45.38 | 40.57 |
| TraesCS2D01G428700.2 | Wheat | mitochondrion | 43.93 | 40.0 |
| TraesCS2B01G452200.4 | Wheat | mitochondrion | 43.64 | 39.74 |
| CDY28259 | Canola | golgi | 43.06 | 39.63 |
| CDX68738 | Canola | golgi | 43.06 | 39.63 |
| KRH02808 | Soybean | golgi | 47.69 | 39.29 |
| Zm00001d002382_P002 | Maize | golgi, mitochondrion | 43.93 | 39.28 |
| TraesCS2A01G430900.2 | Wheat | mitochondrion | 43.06 | 38.6 |
| Os08t0225400-01 | Rice | cytosol, golgi | 44.51 | 37.29 |
| CDY14193 | Canola | mitochondrion | 51.73 | 34.16 |
| CDX78440 | Canola | cytosol | 30.35 | 32.51 |
| CDX80552 | Canola | cytosol | 13.87 | 31.37 |
| CDX70417 | Canola | cytosol | 26.01 | 30.0 |
| CDY43927 | Canola | golgi | 32.95 | 29.31 |
| CDX87842 | Canola | golgi | 32.66 | 29.05 |
| CDY31036 | Canola | golgi | 31.5 | 28.91 |
| CDX93443 | Canola | golgi | 32.08 | 28.91 |
| CDX94911 | Canola | golgi | 32.08 | 28.83 |
| CDY51451 | Canola | golgi | 31.5 | 28.61 |
| CDX73016 | Canola | mitochondrion | 28.61 | 28.53 |
| CDX97139 | Canola | golgi | 31.5 | 28.24 |
| CDX97141 | Canola | golgi | 31.5 | 28.24 |
| CDX88209 | Canola | golgi | 28.32 | 28.0 |
| CDX69735 | Canola | golgi | 31.21 | 27.98 |
| CDY20644 | Canola | golgi | 31.5 | 27.95 |
| CDY56916 | Canola | cytosol, golgi, plasma membrane, plastid | 30.35 | 27.56 |
| CDY19328 | Canola | golgi, mitochondrion | 29.48 | 26.98 |
| CDX78439 | Canola | golgi | 31.21 | 26.93 |
| CDX97140 | Canola | golgi | 31.21 | 26.34 |
| CDX96025 | Canola | golgi, vacuole | 31.5 | 26.2 |
| CDX70676 | Canola | cytosol, golgi, nucleus | 30.06 | 25.87 |
| CDX78674 | Canola | cytosol, golgi, plasma membrane | 30.06 | 25.81 |
| CDX96026 | Canola | golgi | 29.48 | 25.76 |
| CDY59035 | Canola | golgi | 31.21 | 25.65 |
| CDX81507 | Canola | golgi | 29.77 | 25.12 |
| CDX70416 | Canola | golgi | 31.5 | 24.94 |
| CDX69465 | Canola | golgi | 29.19 | 24.94 |
| CDY44904 | Canola | golgi | 29.48 | 24.88 |
| CDY20597 | Canola | golgi | 23.12 | 23.53 |
| CDY24895 | Canola | mitochondrion | 25.14 | 23.32 |
| CDY08638 | Canola | mitochondrion | 25.14 | 22.96 |
| CDX69574 | Canola | mitochondrion | 23.99 | 22.68 |
| CDY21023 | Canola | golgi | 24.57 | 22.61 |
| CDY31228 | Canola | golgi | 23.99 | 22.43 |
| CDY09869 | Canola | mitochondrion | 23.41 | 22.13 |
| CDY70337 | Canola | golgi | 23.7 | 21.98 |
| CDY34605 | Canola | golgi | 23.7 | 21.69 |
| CDX73017 | Canola | cytosol | 0.87 | 21.43 |
| CDY26504 | Canola | cytosol | 8.67 | 19.74 |
| CDY66259 | Canola | cytosol | 19.65 | 15.81 |
| CDX97918 | Canola | golgi | 28.32 | 15.53 |
Protein Annotations
| EnsemblPlants:CDY57290 | EnsemblPlantsGene:GSBRNA2T00020763001 | GO:A0A078J3W5 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016740 | InterPro:Glyco_trans_14 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF1 |
| PFAM:PF02485 | ProteinID:CDY57290 | ProteinID:CDY57290.1 | SEG:seg | UniParc:UPI0004EE9633 | UniProt:A0A078J3W5 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC06g41260DBnaC06g41260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3W5]
Coordinates
chrLK033561:-:35856..39005
Molecular Weight (calculated)
40031.9 Da
IEP (calculated)
7.153
GRAVY (calculated)
-0.269
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVMYKGEYT EKIRKSMDND LGDLLDLCNL VSLFYHSILL ICTHMMSPRH SKISSSSWLP IHVRKLSDAE VAARAVVRHI LKTPPFITSN SKLAFLFLTP
101: GTLPFEKLWD KFFTVSSSTK RFSIYIHPTN ERPVHISSHF FDREINSDEV IEGRISVVDA EKRLLVSALE DPHNQHFVLL SERYLLYSNV SFIQSFVDPG
201: PHGTGRHIEH MLPEIAREDF RKGAQWFTMK RQHALPTFFS MIDPMGISNW SATYVDWSER RWYPKTCTAN EISLDFMKNV TTEEMSIHGT SVGEHGDELH
301: WPCTWNGITR PCYLFARKFH PDALDTLLNL FPNFDTRQVA ECTKLS
101: GTLPFEKLWD KFFTVSSSTK RFSIYIHPTN ERPVHISSHF FDREINSDEV IEGRISVVDA EKRLLVSALE DPHNQHFVLL SERYLLYSNV SFIQSFVDPG
201: PHGTGRHIEH MLPEIAREDF RKGAQWFTMK RQHALPTFFS MIDPMGISNW SATYVDWSER RWYPKTCTAN EISLDFMKNV TTEEMSIHGT SVGEHGDELH
301: WPCTWNGITR PCYLFARKFH PDALDTLLNL FPNFDTRQVA ECTKLS
001: MGETQKILQG PRHHTSLKKP LWVVLTVSVT SMLLICTHMY PKHGKSSSCH GLYSTRGCED ALSKWLPVHV RKFTDEEIAA RAVVRDILRT PPFITNNSKI
101: AFLFLTPGTL PFEKLWDEFF KGHEGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLVSESCI PLHTFDYTYR
201: YLLYSNVSFI ESFVDPGPHG TGRHMEHMLP EIAKEDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFN MIDPMGISNW
301: SVTFVDWSER RWHPKTYGGN EISLEFMKNV TSEDMSVHVT SVGKHGDELH WPCTWNGIKR PCYLFARKFH PDTLDTLVNL FPNYTNTAV
101: AFLFLTPGTL PFEKLWDEFF KGHEGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLVSESCI PLHTFDYTYR
201: YLLYSNVSFI ESFVDPGPHG TGRHMEHMLP EIAKEDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFN MIDPMGISNW
301: SVTFVDWSER RWHPKTYGGN EISLEFMKNV TSEDMSVHVT SVGKHGDELH WPCTWNGIKR PCYLFARKFH PDTLDTLVNL FPNYTNTAV
Arabidopsis Description
At4g25870 [Source:UniProtKB/TrEMBL;Acc:Q9SVZ8]
SUBAcon: [mitochondrion,golgi,plastid,cytosol]
SUBAcon: [mitochondrion,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.