CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	golgi, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024111.1-P	Field mustard	mitochondrion	93.28	100.0
CDY46724	Canola	mitochondrion	97.51	97.27
CDY03552	Canola	golgi, mitochondrion	87.56	87.78
AT4G30060.1	Thale cress	golgi	87.31	87.53
CDY66853	Canola	mitochondrion	74.63	75.76
CDY03361	Canola	mitochondrion	73.63	74.94
CDY12850	Canola	mitochondrion	72.64	73.37
CDX83505	Canola	mitochondrion	72.64	73.37
CDY01412	Canola	mitochondrion	72.64	73.18
CDY51089	Canola	golgi, mitochondrion	70.15	71.39
CDX82625	Canola	mitochondrion	70.15	71.39
CDX89388	Canola	cytosol	39.55	69.74
CDY14193	Canola	mitochondrion	88.06	67.56
CDY49466	Canola	cytosol	41.04	64.2
KRH19073	Soybean	golgi	62.44	63.87
CDX94406	Canola	golgi	59.2	62.8
CDY25922	Canola	golgi	60.7	62.72
CDY38285	Canola	golgi	60.7	62.72
Solyc07g008940.2.1	Tomato	golgi	60.95	62.34
CDX92736	Canola	mitochondrion	58.71	62.27
CDY11878	Canola	golgi	60.2	62.21
CDX88613	Canola	golgi	60.2	62.21
CDY42774	Canola	mitochondrion	58.46	62.01
PGSC0003DMT400073984	Potato	golgi	60.2	61.58
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	60.7	60.55
KRH02808	Soybean	golgi	62.69	60.0
HORVU2Hr1G100480.3	Barley	cytosol	46.02	56.92
CDY28259	Canola	golgi	52.49	56.12
CDX68738	Canola	golgi	52.49	56.12
Zm00001d024348_P002	Maize	mitochondrion	51.49	55.95
CDY66012	Canola	mitochondrion	50.75	55.89
KXG24737	Sorghum	golgi	53.23	55.87
EES12818	Sorghum	golgi	53.48	55.56
Zm00001d026261_P001	Maize	golgi, mitochondrion	52.74	55.35
Zm00001d002382_P002	Maize	golgi, mitochondrion	52.74	54.78
TraesCS2D01G428700.2	Wheat	mitochondrion	50.5	53.42
TraesCS2B01G452200.4	Wheat	mitochondrion	50.25	53.16
CDY57290	Canola	cytosol	45.27	52.6
TraesCS2A01G430900.2	Wheat	mitochondrion	50.0	52.07
Os08t0225400-01	Rice	cytosol, golgi	52.99	51.57
CDX78440	Canola	cytosol	31.09	38.7
CDX73016	Canola	mitochondrion	32.34	37.46
CDX70417	Canola	cytosol	27.36	36.67
CDY31036	Canola	golgi	33.33	35.54
CDX80552	Canola	cytosol	13.43	35.29
CDX87842	Canola	golgi	33.83	34.96
CDY43927	Canola	golgi	33.83	34.96
CDX94911	Canola	golgi	33.33	34.81
CDX93443	Canola	golgi	33.08	34.64
CDX78674	Canola	cytosol, golgi, plasma membrane	34.58	34.49
CDX97139	Canola	golgi	32.84	34.2
CDX69735	Canola	golgi	32.84	34.2
CDX97141	Canola	golgi	32.84	34.2
CDY20644	Canola	golgi	33.08	34.1
CDY51451	Canola	golgi	32.09	33.86
CDX70676	Canola	cytosol, golgi, nucleus	33.83	33.83
CDX69465	Canola	golgi	34.08	33.83
CDY08638	Canola	mitochondrion	31.59	33.51
CDX78439	Canola	golgi	33.33	33.42
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	31.59	33.33
CDY24895	Canola	mitochondrion	30.85	33.24
CDY19328	Canola	golgi, mitochondrion	31.09	33.07
CDX69574	Canola	mitochondrion	29.85	32.79
CDY09869	Canola	mitochondrion	29.6	32.51
CDX97140	Canola	golgi	33.08	32.44
CDY26504	Canola	cytosol	12.19	32.24
CDX96025	Canola	golgi, vacuole	33.33	32.21
CDX81507	Canola	golgi	32.84	32.2
CDX96026	Canola	golgi	31.59	32.07
CDY44904	Canola	golgi	32.59	31.95
CDY59035	Canola	golgi	33.08	31.59
CDX88209	Canola	golgi	27.36	31.43
CDX70416	Canola	golgi	33.33	30.66
CDY34605	Canola	golgi	28.61	30.42
CDY21023	Canola	golgi	28.36	30.32
CDY20597	Canola	golgi	25.62	30.29
CDY31228	Canola	golgi	27.61	30.0
CDY70337	Canola	golgi	25.12	27.08
CDY66259	Canola	cytosol	24.38	22.79
CDX97918	Canola	golgi	30.1	19.18
CDX73017	Canola	cytosol	0.5	14.29

Protein Annotations

EnsemblPlants:CDY30178	EnsemblPlantsGene:GSBRNA2T00044766001	GO:A0A078H016	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF1	PFAM:PF02485	ProteinID:CDY30178	ProteinID:CDY30178.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EF0F18	UniProt:A0A078H016	MapMan:35.1	:	:	:

Description

BnaA03g49920DBnaA03g49920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H016]

Coordinates

chrLK032250:+:76378..78595

Molecular Weight (calculated)

46851.6 Da

IEP (calculated)

8.676

GRAVY (calculated)

-0.278

Length

402 amino acids

Sequence
(BLAST)

001: MKAAKRWSVG NLASLPGARH RAPARRRLWI IMALSLIIMT LSLITMLAIM AYMYPHHSKR ACYMISSRGC KALADWLPPS LREYSDDEIA ARVVIREIMS
101: NAPVIRRDSK IAFMFLTPGT LPFERLWDIF FQGHEGKFSV YIHASKERPV HQSHYFANRE IRSDEVVWGR ISMVDAERRL LANALRDPAN QQFVLLSESC
201: VPLRSFEYMY NYLMYSNLSY VDCFDDPGQH GSGRHMDHML PEIPKKYFRK GAQWFTMKRQ HAIVIMADSL YYSRFRDYCG PGIENNKNCI ADEHYLPTFF
301: HMLDPGGISN WSVTQVDWSE RQWHPKTYMP EDVTHELLNN LTSADTVAHV TSVGMGEELW MPCMWNGIKR PCFLFGRKFH PDTLDKLLDL FSNYTRSVSW
401: HL

Best Arabidopsis Sequence Match ( AT4G30060.1 )
(BLAST)

001: MKAVKRWSIG NLADIPVSLP GARYRAPPPG RRRVWIIMVL SLITMFFIMA YMYPHHSKRA CYMISSRGCK ALADWLPPSL REYSDDEIAA RVVIREILSS
101: PPVIRKNSKI AFMFLTPGTL PFERLWDRFF LGHEGKFSVY IHASKERPVH YSRYFLNREI RSDEVVWGRI SMVDAERRLL ANALRDTSNQ QFVLLSDSCV
201: PLRSFEYIYN YLMHSNLSYV DCFDDPGQHG AGRHMNHMLP EIPKKDFRKG AQWFTMKRQH AVATMADSLY YSKFRDYCGP GIENNKNCIA DEHYLPTFFH
301: MLDPGGIANW TVTQVDWSER KWHPKTYMPE DITHELLNNL TSTDTLVHVT SVGMGEEIWM PCMWNGIQRP CYLFGRKFHP DTLDKLLDLF SNYTRSVTWN
401: L

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4E9]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.