CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
mitochondrion 1
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78439	Canola	golgi	86.73	94.51
AT5G11730.1	Thale cress	golgi	75.51	85.49
CDX78440	Canola	cytosol	62.24	84.21
CDX97141	Canola	golgi	73.68	83.42
CDX97139	Canola	golgi	73.46	83.16
CDX69735	Canola	golgi	73.0	82.64
CDX70417	Canola	cytosol	54.46	79.33
CDX97140	Canola	golgi	71.85	76.59
CDX80552	Canola	cytosol	24.49	69.93
CDX88209	Canola	golgi	54.92	68.57
EER93518	Sorghum	golgi, plasma membrane, plastid	51.49	58.29
GSMUA_Achr1P14240_001	Banana	golgi	47.37	57.82
Zm00001d033892_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	47.83	57.26
TraesCS4A01G253400.1	Wheat	golgi, plasma membrane, plastid	50.8	56.78
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	50.57	56.38
GSMUA_Achr3P25730_001	Banana	golgi	46.22	56.27
TraesCS4B01G062000.1	Wheat	golgi, plasma membrane, plastid	50.34	56.12
EER93516	Sorghum	golgi	47.83	55.0
HORVU4Hr1G010270.2	Barley	golgi, peroxisome	50.34	55.0
CDY51451	Canola	golgi	47.83	54.86
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	50.34	54.73
CDY43927	Canola	golgi	48.28	54.24
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	46.91	53.81
CDX87842	Canola	golgi	47.83	53.73
Zm00001d033891_P001	Maize	cytosol, golgi, plasma membrane	49.43	53.6
Zm00001d033890_P001	Maize	golgi	50.57	52.49
Os03t0731050-00	Rice	plastid	49.66	50.7
CDY31036	Canola	golgi	39.82	46.15
CDX73016	Canola	mitochondrion	36.16	45.53
CDX94911	Canola	golgi	40.05	45.45
CDX93443	Canola	golgi	39.82	45.31
CDY19328	Canola	golgi, mitochondrion	38.44	44.44
CDY20644	Canola	golgi	39.59	44.36
CDX96025	Canola	golgi, vacuole	40.73	42.79
CDX70676	Canola	cytosol, golgi, nucleus	39.36	42.79
CDX69465	Canola	golgi	39.59	42.72
CDX81507	Canola	golgi	40.05	42.68
CDY44904	Canola	golgi	40.05	42.68
CDX78674	Canola	cytosol, golgi, plasma membrane	39.36	42.68
CDX89388	Canola	cytosol	22.2	42.54
CDY20597	Canola	golgi	32.72	42.06
CDY59035	Canola	golgi	40.5	42.04
CDX96026	Canola	golgi	37.76	41.67
CDY26504	Canola	cytosol	13.73	39.47
CDY49466	Canola	cytosol	21.74	36.97
CDX92736	Canola	mitochondrion	31.58	36.41
CDX94406	Canola	golgi	31.35	36.15
CDY42774	Canola	mitochondrion	31.35	36.15
CDY70337	Canola	golgi	30.43	35.66
CDX68738	Canola	golgi	30.43	35.37
CDY28259	Canola	golgi	30.43	35.37
CDY11878	Canola	golgi	30.89	34.7
CDX88613	Canola	golgi	30.89	34.7
CDY38285	Canola	golgi	30.43	34.19
CDY25922	Canola	golgi	30.43	34.19
CDY46724	Canola	mitochondrion	31.12	33.75
CDY03361	Canola	mitochondrion	30.43	33.67
CDY30178	Canola	mitochondrion	30.66	33.33
CDY66853	Canola	mitochondrion	30.21	33.33
CDY12850	Canola	mitochondrion	30.21	33.17
CDX83505	Canola	mitochondrion	30.21	33.17
CDY01412	Canola	mitochondrion	30.21	33.08
CDY03552	Canola	golgi, mitochondrion	29.75	32.42
CDY08638	Canola	mitochondrion	27.46	31.66
CDX82625	Canola	mitochondrion	28.6	31.65
CDY24895	Canola	mitochondrion	27.0	31.64
CDY66012	Canola	mitochondrion	26.32	31.51
CDY57290	Canola	cytosol	24.94	31.5
CDY51089	Canola	golgi, mitochondrion	28.15	31.14
CDX69574	Canola	mitochondrion	25.86	30.87
CDY09869	Canola	mitochondrion	25.63	30.6
CDY34605	Canola	golgi	25.4	29.37
CDY31228	Canola	golgi	24.49	28.92
CDY21023	Canola	golgi	24.26	28.19
CDX97918	Canola	golgi	37.3	25.83
CDY14193	Canola	mitochondrion	30.21	25.19
CDY66259	Canola	cytosol	22.65	23.02
CDX73017	Canola	cytosol	0.23	7.14

Protein Annotations

EnsemblPlants:CDX70416	EnsemblPlantsGene:GSBRNA2T00140224001	GO:A0A078C0E3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF54
PFAM:PF02485	ProteinID:CDX70416	ProteinID:CDX70416.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDEE03
MapMan:35.1	:	:	:	:	:

Description

BnaC03g05000D

Coordinates

chrLK031791:+:333210..336210

Molecular Weight (calculated)

50145.5 Da

IEP (calculated)

8.924

GRAVY (calculated)

-0.171

Length

437 amino acids

Sequence
(BLAST)

001: MQTISRVLQE GKENGILVRT GQYNSFRPKL LLLLGLFLAV VVTIFIISVS TIKYTELQSV VTTVTSTFVP CREDESNSLI QPPGVLMHNM SDEELLWRAS
101: FWARRKGYPF KRVPKIAFMF LTKGPLPLAS LWERFLKGHK GLYSVYVHPD PSFNAKFPAD SVFHKRQIPS QQVAEWGRMT MCDAEKRLLA NALLDISNEW
201: FVLVSESCIP LYNFTTIYTY LSQSKHSFIG AVDDPGPFGR GRYNEKMEPE VPITKWRKGP QWFEVDRDLA ATIVKDTLYH HKFREFCRPA CYSDEHYFPT
301: MLTIEKPTAL ANRSVTWTDW SRGGPHPATF GRSDITEEFF GKIFDGENCS YNGRNTSMCY LFARKFAPSA LEPLLHIAPK IMGGNGNITR TQVSYPLFSS
401: LFDLNCFCIN ISPRVFCIHY SIIFSCPRLT QKLYTRD

Best Arabidopsis Sequence Match ( AT1G51770.1 )
(BLAST)

001: MKVMVMEMEE CVKENGSSTP KSRVTNQSRA LLPLRLLQIL LLFLVLTLGI SVVSIHMIKF LKIQRLDPVA PITLLSTYNH ESVTLDSFIR PPSNVWHTMN
101: DSELLWRASI EPQRNGYPFR RVPKLAFMFL AKGPLPFAPL WEKFCKGHEG LYSIYVHSLP SYKSDFSRSS VFYRRYIPSQ AVAWGEMSMG EAERRLLANA
201: LLDISNEWFV LLSESCIPLR GFSFIYSYVS ESRYSFMGAA DEEGPDGRGR YRTEMEPEIT LSQWRKGSQW FEINRKLAVE IVQDTTYYPK FKEFCRPPCY
301: VDEHYFPTML SMKHRVLLAN RTLTWTDWSR GGAHPATFGK ADVTESFLKK LTGAKSCLYN DHQSQICYLF ARKFAPSALE PLLQLAPKIL ELGSNISSTR
401: HSWYLF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q1G300]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.