CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69574	Canola	mitochondrion	96.17	96.17
AT5G14550.1	Thale cress	mitochondrion	88.25	85.68
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	67.21	75.93
KRH56549	Soybean	golgi	67.49	67.86
GSMUA_Achr2P14170_001	Banana	mitochondrion	66.94	66.76
KRG93228	Soybean	golgi	67.21	66.49
Solyc02g086550.2.1	Tomato	golgi, mitochondrion	66.67	65.24
EES19116	Sorghum	golgi	66.39	63.78
TraesCS1A01G114000.1	Wheat	golgi	63.66	59.74
Os05t0170000-02	Rice	golgi	65.03	59.65
TraesCS1D01G115700.1	Wheat	golgi	63.39	59.64
TraesCS1B01G134300.1	Wheat	golgi	63.39	59.49
PGSC0003DMT400001379	Potato	mitochondrion	66.39	58.0
HORVU0Hr1G039960.6	Barley	golgi	37.98	53.46
CDY24895	Canola	mitochondrion	47.54	46.65
CDY08638	Canola	mitochondrion	47.81	46.17
Zm00001d009810_P003	Maize	mitochondrion, vacuole	65.85	45.39
CDY21023	Canola	golgi	46.45	45.21
CDY31228	Canola	golgi	45.36	44.86
CDY34605	Canola	golgi	44.26	42.86
CDX80552	Canola	cytosol	15.3	36.6
CDX89388	Canola	cytosol	21.04	33.77
CDY66259	Canola	cytosol	38.52	32.79
CDY49466	Canola	cytosol	22.95	32.68
CDX78440	Canola	cytosol	28.42	32.2
CDY28259	Canola	golgi	33.06	32.18
CDX68738	Canola	golgi	33.06	32.18
CDX73016	Canola	mitochondrion	29.23	30.84
CDY03361	Canola	mitochondrion	33.06	30.63
CDY66853	Canola	mitochondrion	33.06	30.56
CDY20644	Canola	golgi	32.24	30.26
CDY31036	Canola	golgi	31.15	30.24
CDX69735	Canola	golgi	31.69	30.05
CDX70417	Canola	cytosol	24.59	30.0
CDX93443	Canola	golgi	31.42	29.95
CDY19328	Canola	golgi, mitochondrion	30.87	29.89
CDY51089	Canola	golgi, mitochondrion	32.24	29.87
CDX97139	Canola	golgi	31.42	29.79
CDX97141	Canola	golgi	31.42	29.79
CDX94911	Canola	golgi	31.15	29.61
CDY30178	Canola	mitochondrion	32.51	29.6
CDY46724	Canola	mitochondrion	32.51	29.53
CDY03552	Canola	golgi, mitochondrion	32.24	29.43
CDY12850	Canola	mitochondrion	31.97	29.4
CDX83505	Canola	mitochondrion	31.97	29.4
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	30.6	29.4
CDY51451	Canola	golgi	30.6	29.4
CDX82625	Canola	mitochondrion	31.69	29.37
CDY01412	Canola	mitochondrion	31.97	29.32
CDY11878	Canola	golgi	31.15	29.31
CDX88613	Canola	golgi	31.15	29.31
CDX94406	Canola	golgi	30.33	29.29
CDX87842	Canola	golgi	30.87	29.05
CDY43927	Canola	golgi	30.87	29.05
CDX78674	Canola	cytosol, golgi, plasma membrane	31.97	29.03
CDX70676	Canola	cytosol, golgi, nucleus	31.69	28.86
CDY38285	Canola	golgi	30.6	28.79
CDX92736	Canola	mitochondrion	29.78	28.76
CDY25922	Canola	golgi	30.33	28.53
CDY20597	Canola	golgi	26.5	28.53
CDY42774	Canola	mitochondrion	29.51	28.5
CDX78439	Canola	golgi	30.87	28.18
CDX69465	Canola	golgi	31.15	28.15
CDX96026	Canola	golgi	30.33	28.03
CDX97140	Canola	golgi	30.6	27.32
CDX96025	Canola	golgi, vacuole	30.87	27.16
CDX88209	Canola	golgi	25.96	27.14
CDX81507	Canola	golgi	30.33	27.07
CDY59035	Canola	golgi	30.87	26.84
CDY44904	Canola	golgi	30.05	26.83
CDY26504	Canola	cytosol	10.93	26.32
CDY66012	Canola	mitochondrion	25.68	25.75
CDX70416	Canola	golgi	30.6	25.63
CDY70337	Canola	golgi	25.14	24.66
CDY57290	Canola	cytosol	22.13	23.41
CDY14193	Canola	mitochondrion	32.79	22.9
CDX97918	Canola	golgi	29.51	17.12
CDX73017	Canola	cytosol	0.55	14.29

Protein Annotations

EnsemblPlants:CDY09869	EnsemblPlantsGene:GSBRNA2T00031620001	GO:A0A078FA38	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF6
PFAM:PF02485	ProteinID:CDY09869	ProteinID:CDY09869.1	TMHMM:TMhelix	UniParc:UPI0004EEE9A8	UniProt:A0A078FA38
MapMan:35.1	:	:	:	:	:

Description

BnaC09g42920DBnaC09g42920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA38]

Coordinates

chrLK031999:-:728157..731406

Molecular Weight (calculated)

43250.8 Da

IEP (calculated)

10.195

GRAVY (calculated)

-0.516

Length

366 amino acids

Sequence
(BLAST)

001: MMKKKASQQK LRSRWKRKLF ATFMFAFCLG SFVYFQARYS RIAASLKPRI DQKPQIAFLF IARNRLPLEF VWDAFFLGED GKFSIYVHSR PGFVLSEATT
101: QSKYFLNRQV NDSIQVEWGE ATMIEAERVL LRHALRDPFN HRFVFLSDSC IPLYSFSYTY NYIMSTPTSF VDSFADTKDK RYNPRMDPVI HVHNWRKGSQ
201: WVVLNRKHAE IVVNDTIVLP MFQQHCRRKS LPEFWRDRPV PAEGWKEHNC IPDEHYVQTL LAQKGVDSEL TRRSLTHSAW DLTSSKSNER RGWHPMSYKF
301: SDATPHLIQS IKGIDNINYE TEYRREWCTS KGKPASCFLF ARKFTRPAAL RLLRESILLR DKEQDS

Best Arabidopsis Sequence Match ( AT5G14550.1 )
(BLAST)

001: MKKKVSQQKL LYRWKRKVYA TLMFAFCFGT FVFIQARFAS IQARFNRISA SLDSLKKPRL DQRPQIAFLF IARNRLPLEF VWDAFFKGED GKFSIYVHSR
101: PGFVLNEATT RSKYFLDRQL NDSIQVDWGE STMIEAERVL LRHALRDSFN HRFVFLSDSC IPLYSFSYTY NYIMSTPTSF VDSFADTKDS RYNPRMNPII
201: PVRNWRKGSQ WVVLNRKHAE IVVNDTSVFP MFQQHCRRKS LPEFWRDRPV PAEGWKEHNC IPDEHYVQTL LSQKGVDSEL TRRSLTHSAW DLSSSKSNER
301: RGWHPMTYKF SDATPDLIQS IKGIDNINYE TEYRREWCSS KGKPSPCFLF ARKFTRPAAL RLLRETILLE GKEHDNK

Arabidopsis Description

At5g14550 [Source:UniProtKB/TrEMBL;Acc:B6IDH4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.