CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97139	Canola	golgi	91.95	97.67
CDX97141	Canola	golgi	91.46	97.15
CDX69735	Canola	golgi	88.78	94.3
Bra008941.1-P	Field mustard	golgi	88.05	93.52
AT5G11730.1	Thale cress	golgi	81.22	86.27
CDX78440	Canola	cytosol	64.15	81.42
CDX78439	Canola	golgi	76.83	78.55
CDX70417	Canola	cytosol	56.1	76.67
CDX70416	Canola	golgi	76.59	71.85
CDX80552	Canola	cytosol	26.34	70.59
CDX88209	Canola	golgi	59.76	70.0
EER93518	Sorghum	golgi, plasma membrane, plastid	56.83	60.36
GSMUA_Achr1P14240_001	Banana	golgi	51.95	59.5
GSMUA_Achr3P25730_001	Banana	golgi	51.46	58.77
Zm00001d033892_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	51.95	58.36
TraesCS4A01G253400.1	Wheat	golgi, plasma membrane, plastid	55.37	58.06
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	55.12	57.65
TraesCS4B01G062000.1	Wheat	golgi, plasma membrane, plastid	54.88	57.4
HORVU4Hr1G010270.2	Barley	golgi, peroxisome	55.37	56.75
EER93516	Sorghum	golgi	51.95	56.05
CDY51451	Canola	golgi	51.95	55.91
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	54.63	55.72
CDY43927	Canola	golgi	52.44	55.27
CDX87842	Canola	golgi	51.95	54.76
Zm00001d033890_P001	Maize	golgi	56.1	54.63
Zm00001d033891_P001	Maize	cytosol, golgi, plasma membrane	53.41	54.34
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	50.49	54.33
Os03t0731050-00	Rice	plastid	54.15	51.87
CDY31036	Canola	golgi	43.41	47.21
CDX93443	Canola	golgi	43.66	46.61
CDX94911	Canola	golgi	43.66	46.49
CDX73016	Canola	mitochondrion	39.02	46.11
CDY20644	Canola	golgi	43.17	45.38
CDY19328	Canola	golgi, mitochondrion	40.49	43.92
CDX96025	Canola	golgi, vacuole	44.39	43.75
CDY44904	Canola	golgi	43.41	43.41
CDX81507	Canola	golgi	43.41	43.41
CDX69465	Canola	golgi	42.68	43.21
CDY59035	Canola	golgi	43.9	42.76
CDX70676	Canola	cytosol, golgi, nucleus	41.46	42.29
CDX78674	Canola	cytosol, golgi, plasma membrane	41.46	42.18
CDX96026	Canola	golgi	40.24	41.67
CDY20597	Canola	golgi	34.39	41.47
CDX89388	Canola	cytosol	22.93	41.23
CDY26504	Canola	cytosol	14.88	40.13
CDY49466	Canola	cytosol	23.41	37.35
CDX68738	Canola	golgi	33.41	36.44
CDY28259	Canola	golgi	33.41	36.44
CDY70337	Canola	golgi	32.2	35.39
CDX92736	Canola	mitochondrion	32.44	35.09
CDX94406	Canola	golgi	32.2	34.83
CDY42774	Canola	mitochondrion	32.2	34.83
CDY11878	Canola	golgi	32.68	34.45
CDX88613	Canola	golgi	32.68	34.45
CDX83505	Canola	mitochondrion	33.41	34.42
CDY12850	Canola	mitochondrion	33.41	34.42
CDY01412	Canola	mitochondrion	33.41	34.34
CDX82625	Canola	mitochondrion	32.93	34.18
CDY66853	Canola	mitochondrion	32.93	34.09
CDY03361	Canola	mitochondrion	32.68	33.92
CDY46724	Canola	mitochondrion	32.93	33.5
CDY38285	Canola	golgi	31.71	33.42
CDY51089	Canola	golgi, mitochondrion	32.2	33.42
CDY03552	Canola	golgi, mitochondrion	32.68	33.42
CDY25922	Canola	golgi	31.46	33.16
CDY30178	Canola	mitochondrion	32.44	33.08
CDY57290	Canola	cytosol	26.34	31.21
CDY24895	Canola	mitochondrion	28.29	31.1
CDX69574	Canola	mitochondrion	27.56	30.87
CDY08638	Canola	mitochondrion	28.29	30.61
CDY09869	Canola	mitochondrion	27.32	30.6
CDY66012	Canola	mitochondrion	27.07	30.41
CDY31228	Canola	golgi	27.07	30.0
CDY34605	Canola	golgi	26.83	29.1
CDY21023	Canola	golgi	26.59	28.99
CDY14193	Canola	mitochondrion	33.17	25.95
CDX97918	Canola	golgi	39.51	25.67
CDY66259	Canola	cytosol	24.15	23.02
CDX73017	Canola	cytosol	0.73	21.43

Protein Annotations

EnsemblPlants:CDX97140	EnsemblPlantsGene:GSBRNA2T00104127001	GO:A0A078E526	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF54
PFAM:PF02485	ProteinID:CDX97140	ProteinID:CDX97140.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEF4E9
MapMan:35.1	:	:	:	:	:

Description

BnaC09g44850D

Coordinates

chrLK031897:+:868746..870709

Molecular Weight (calculated)

46962.9 Da

IEP (calculated)

9.592

GRAVY (calculated)

-0.173

Length

410 amino acids

Sequence
(BLAST)

001: MQTRVIQMED GKENGILTRT GKSKPFPAKL LLILGLFLAF ALTVFVISVS TIKYTGLQNV VTTVTSGFVT CREDEPNSLG KWIQPPAVLM HNMSDEELLW
101: RASFWPRRKE YPFQRVPKVA FMFLTKGPLP LALLWERFLK GHKGLYSVYV HPHPSFTAKF PAGSVFHQRQ IPSQVAEWGR MTMCDAEKRL LANALLDISN
201: EWFVLVSESC IPLFNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNHNME PEVPITKWRK GSQWFEINRE LAATIVKDTL YYPKFKDFCR PACYVDEHYF
301: PTMLTIEKPM ALANRSLTWV DWSRGGPHPA TFGRSDITER FFEKILDGKN CIYNGRNTSM CYLFARKFAP SALESKETAS TLLFKVSLLD SSSSPPLSLS
401: LHLQSLKIDW

Best Arabidopsis Sequence Match ( AT5G11730.1 )
(BLAST)

001: MQNRIVQLEE GKENGITVRS GHYKGFPSKL LLLLGLFLTF SVTVFIISVS TIKYTGIQSV VTTVTSSFVP CREGEPNSLS KWIQPPAVLM HNMSDEELLW
101: RASFWPRRKE YPFKRVPKVA FMFLTKGPLP LASLWERFLK GHKGLYSVYL HPHPSFTAKF PASSVFHRRQ IPSQVAEWGR MSMCDAEKRL LANALLDVSN
201: EWFVLVSESC IPLYNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNGNME PEVPLTKWRK GSQWFEVNRD LAATIVKDTL YYPKFKEFCR PACYVDEHYF
301: PTMLTIEKPT VLANRSLTWV DWSRGGPHPA TFGRSDITEN FFGKIFDGRN CSYNGRNTSM CYLFARKFAP SALEPLLHIA PKILGF

Arabidopsis Description

At5g11730 [Source:UniProtKB/TrEMBL;Acc:Q9LYF7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.