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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • golgi 4
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96025 Canola golgi, vacuole 96.44 97.6
CDX81507 Canola golgi 85.51 87.8
CDY44904 Canola golgi 85.04 87.32
AT1G68390.1 Thale cress plastid 82.9 85.54
CDX96026 Canola golgi 60.81 64.65
CDY70337 Canola golgi 51.07 57.64
CDX73016 Canola mitochondrion 41.81 50.72
CDX78440 Canola cytosol 38.24 49.85
CDY31036 Canola golgi 43.23 48.28
CDY51451 Canola golgi 43.47 48.03
CDX94911 Canola golgi 43.71 47.79
CDY56916 Canola cytosol, golgi, plasma membrane, plastid 42.99 47.51
CDX97139 Canola golgi 43.47 47.41
CDX69735 Canola golgi 43.23 47.15
CDX97141 Canola golgi 43.23 47.15
CDX93443 Canola golgi 42.99 47.14
CDX87842 Canola golgi 43.47 47.04
CDY19328 Canola golgi, mitochondrion 42.04 46.83
CDY20644 Canola golgi 43.23 46.67
CDY43927 Canola golgi 42.99 46.53
CDX70417 Canola cytosol 33.02 46.33
CDX80552 Canola cytosol 16.39 45.1
CDX78439 Canola golgi 42.28 44.39
CDX70676 Canola cytosol, golgi, nucleus 42.28 44.28
CDX97140 Canola golgi 42.76 43.9
CDX78674 Canola cytosol, golgi, plasma membrane 41.57 43.42
CDX69465 Canola golgi 41.09 42.72
CDY20597 Canola golgi 34.44 42.65
CDX88209 Canola golgi 34.68 41.71
CDX70416 Canola golgi 42.04 40.5
CDY26504 Canola cytosol 14.25 39.47
CDX89388 Canola cytosol 20.9 38.6
CDY49466 Canola cytosol 22.57 36.97
CDX68738 Canola golgi 32.07 35.9
CDY28259 Canola golgi 32.07 35.9
CDX92736 Canola mitochondrion 32.3 35.88
CDY42774 Canola mitochondrion 32.07 35.62
CDX94406 Canola golgi 31.35 34.83
CDY03552 Canola golgi, mitochondrion 32.07 33.67
CDY46724 Canola mitochondrion 32.07 33.5
CDY30178 Canola mitochondrion 31.59 33.08
CDY11878 Canola golgi 29.93 32.39
CDX88613 Canola golgi 29.93 32.39
CDY38285 Canola golgi 29.93 32.39
CDX83505 Canola mitochondrion 30.4 32.16
CDY12850 Canola mitochondrion 30.4 32.16
CDY03361 Canola mitochondrion 30.17 32.15
CDY25922 Canola golgi 29.69 32.13
CDY01412 Canola mitochondrion 30.4 32.08
CDY66853 Canola mitochondrion 29.93 31.82
CDY66012 Canola mitochondrion 27.55 31.78
CDY51089 Canola golgi, mitochondrion 29.69 31.65
CDX82625 Canola mitochondrion 29.45 31.39
CDY57290 Canola cytosol 25.65 31.21
CDY09869 Canola mitochondrion 26.84 30.87
CDX69574 Canola mitochondrion 26.84 30.87
CDY34605 Canola golgi 27.55 30.69
CDY08638 Canola mitochondrion 27.55 30.61
CDY24895 Canola mitochondrion 27.08 30.56
CDY21023 Canola golgi 27.08 30.32
CDY31228 Canola golgi 26.37 30.0
CDX97918 Canola golgi 39.91 26.62
CDY14193 Canola mitochondrion 32.07 25.76
CDY66259 Canola cytosol 23.04 22.56
CDX73017 Canola cytosol 0.71 21.43
Protein Annotations
EnsemblPlants:CDY59035EnsemblPlantsGene:GSBRNA2T00025468001GO:A0A078J0Z4GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0008375GO:GO:0016020GO:GO:0016021GO:GO:0016740InterPro:Glyco_trans_14PANTHER:PTHR31042
PANTHER:PTHR31042:SF56PFAM:PF02485ProteinID:CDY59035ProteinID:CDY59035.1SEG:segSUPFAM:SSF101447
TMHMM:TMhelixUniParc:UPI0004EAE3E6UniProt:A0A078J0Z4MapMan:35.1::
Description
BnaCnng34190DBnaCnng34190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0Z4]
Coordinates
chrLK033719:+:44083..47804
Molecular Weight (calculated)
48522.6 Da
IEP (calculated)
9.279
GRAVY (calculated)
-0.352
Length
421 amino acids
Sequence
(BLAST)
001: MKNQKEQNSS LSSSSPSLVA KLLNAQYLQF LNLLSYSLIL CCGIIIGILL HSSLQDISSI SSPNIQRISQ LFLVSSIPSP PPPPPPPPPP SLPPPSPPPP
101: SQPEHIGLEQ FLRPPKKIMH DMEEEELLWR ASMTPKIKNY PFPRTPKVAF MFLTKGHLPL APLWERFFRG HEGLFSIYVH SYPSYNQTDP EGSVFHGRLI
201: PSKRVDWGYV NMVEAEQRLL ANALLDISNE RFVLLSESCI PLFNFTTVYS YLTKSTQTHV ESYDELSGVG RGRYSPEMKP RIQLRHWRKG SQWFELDRAM
301: ALEIISDKIY WPLFYRYCHH GCYTDEHYIP TLLNIKSSLG RRNSNRTLTW VDWSKGGPHP NRFIRYEVTE EFLLKLRSGG EENRQCYHNG EKTNICYLFA
401: RKFLPTALGR LLRLAPTVLY F
Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)
001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF
Arabidopsis Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.