CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
mitochondrion 3
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89388	Canola	cytosol	58.58	97.37
CDX92736	Canola	mitochondrion	90.77	90.77
CDY42774	Canola	mitochondrion	89.97	89.97
AT4G25870.1	Thale cress	cytosol, golgi, mitochondrion, plastid	90.77	88.43
CDY49466	Canola	cytosol	56.73	83.66
CDY66012	Canola	mitochondrion	76.78	79.73
CDY25922	Canola	golgi	75.2	73.26
CDY38285	Canola	golgi	75.2	73.26
CDY57290	Canola	cytosol	66.75	73.12
CDX88613	Canola	golgi	74.93	73.01
CDY11878	Canola	golgi	74.67	72.75
CDY30178	Canola	mitochondrion	62.8	59.2
CDY46724	Canola	mitochondrion	62.8	59.06
CDY03361	Canola	mitochondrion	60.95	58.48
CDY66853	Canola	mitochondrion	60.95	58.33
CDY03552	Canola	golgi, mitochondrion	61.21	57.86
HORVU2Hr1G100480.3	Barley	cytosol	48.81	56.92
Solyc07g008940.2.1	Tomato	golgi	58.84	56.74
CDX83505	Canola	mitochondrion	59.37	56.53
CDY12850	Canola	mitochondrion	59.37	56.53
PGSC0003DMT400073984	Potato	golgi	58.58	56.49
CDY01412	Canola	mitochondrion	59.37	56.39
KRH19073	Soybean	golgi	58.31	56.23
CDX82625	Canola	mitochondrion	57.26	54.94
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	58.31	54.84
Zm00001d024348_P002	Maize	mitochondrion	53.3	54.59
CDY51089	Canola	golgi, mitochondrion	56.73	54.43
Zm00001d026261_P001	Maize	golgi, mitochondrion	54.09	53.52
KXG24737	Sorghum	golgi	53.56	53.0
KRH02808	Soybean	golgi	58.58	52.86
EES12818	Sorghum	golgi	53.56	52.45
Zm00001d002382_P002	Maize	golgi, mitochondrion	52.77	51.68
TraesCS2D01G428700.2	Wheat	mitochondrion	51.45	51.32
CDY28259	Canola	golgi	50.66	51.06
CDX68738	Canola	golgi	50.66	51.06
TraesCS2B01G452200.4	Wheat	mitochondrion	50.92	50.79
TraesCS2A01G430900.2	Wheat	mitochondrion	50.4	49.48
Os08t0225400-01	Rice	cytosol, golgi	53.03	48.67
CDY14193	Canola	mitochondrion	61.74	44.66
CDX80552	Canola	cytosol	16.09	39.87
CDX78440	Canola	cytosol	32.72	38.39
CDX73016	Canola	mitochondrion	33.51	36.6
CDX69735	Canola	golgi	36.15	35.49
CDX70417	Canola	cytosol	27.7	35.0
CDY51451	Canola	golgi	35.09	34.91
CDX78439	Canola	golgi	36.68	34.66
CDX97139	Canola	golgi	35.09	34.46
CDX97141	Canola	golgi	35.09	34.46
CDY43927	Canola	golgi	35.36	34.45
CDX87842	Canola	golgi	35.09	34.19
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	34.04	33.86
CDX93443	Canola	golgi	34.04	33.59
CDY31036	Canola	golgi	33.25	33.42
CDX94911	Canola	golgi	33.77	33.25
CDY19328	Canola	golgi, mitochondrion	32.98	33.07
CDX88209	Canola	golgi	30.34	32.86
CDY20644	Canola	golgi	33.77	32.82
CDX97140	Canola	golgi	34.83	32.2
CDX78674	Canola	cytosol, golgi, plasma membrane	33.51	31.51
CDX96025	Canola	golgi, vacuole	34.56	31.49
CDY59035	Canola	golgi	34.83	31.35
CDX70416	Canola	golgi	36.15	31.35
CDX69574	Canola	mitochondrion	29.82	30.87
CDX70676	Canola	cytosol, golgi, nucleus	32.72	30.85
CDY24895	Canola	mitochondrion	30.34	30.83
CDX69465	Canola	golgi	32.72	30.62
CDY08638	Canola	mitochondrion	30.61	30.61
CDY20597	Canola	golgi	27.44	30.59
CDY09869	Canola	mitochondrion	29.29	30.33
CDX81507	Canola	golgi	32.72	30.24
CDY44904	Canola	golgi	32.72	30.24
CDX96026	Canola	golgi	31.4	30.05
CDY34605	Canola	golgi	29.29	29.37
CDY31228	Canola	golgi	28.23	28.92
CDY21023	Canola	golgi	28.23	28.46
CDY26504	Canola	cytosol	11.08	27.63
CDY70337	Canola	golgi	25.33	25.74
CDY66259	Canola	cytosol	24.8	21.86
CDX97918	Canola	golgi	31.66	19.02
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX94406	EnsemblPlantsGene:GSBRNA2T00157545001	GO:A0A078DYW2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF1
PFAM:PF02485	ProteinID:CDX94406	ProteinID:CDX94406.1	TMHMM:TMhelix	UniParc:UPI0004EE3C10	MapMan:35.1

Description

BnaC01g17780D

Coordinates

chrLK031881:+:966316..968262

Molecular Weight (calculated)

43773.1 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.354

Length

379 amino acids

Sequence
(BLAST)

001: MGEAQKTIQV PRHHTSLKKP LWVVLTVSVI SMLLISTHMF PRQGKRSSSD ALSAWLPAHV RKHTDEEIAA RAVVRDILKT PPSITENSKI AFLFLTPGTL
101: PFEKLWDEFF KGHGGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VNALEDPDNQ HFVLLSESCI PLHTFDYTYR YLLYSNISFI
201: ESFVDPGQHG TGRHMEHMLP EIAREDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFS MLDPMGISNW SVTYVDWSER
301: RWHPKTYTAN EISLEFIKNV TSEEMSTHVT SVGEHGDELH WPCTWNGITR PCYLFARKFH PDALDTLVNL FPNYTSTAA

Best Arabidopsis Sequence Match ( AT4G25870.1 )
(BLAST)

001: MGETQKILQG PRHHTSLKKP LWVVLTVSVT SMLLICTHMY PKHGKSSSCH GLYSTRGCED ALSKWLPVHV RKFTDEEIAA RAVVRDILRT PPFITNNSKI
101: AFLFLTPGTL PFEKLWDEFF KGHEGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLVSESCI PLHTFDYTYR
201: YLLYSNVSFI ESFVDPGPHG TGRHMEHMLP EIAKEDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFN MIDPMGISNW
301: SVTFVDWSER RWHPKTYGGN EISLEFMKNV TSEDMSVHVT SVGKHGDELH WPCTWNGIKR PCYLFARKFH PDTLDTLVNL FPNYTNTAV

Arabidopsis Description

At4g25870 [Source:UniProtKB/TrEMBL;Acc:Q9SVZ8]
SUBAcon: [mitochondrion,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.