Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid, golgi, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89388 | Canola | cytosol | 54.76 | 93.42 |
| Bra013927.1-P | Field mustard | golgi, plastid | 86.63 | 92.08 |
| CDX94406 | Canola | golgi | 88.43 | 90.77 |
| CDX92736 | Canola | mitochondrion | 86.89 | 89.18 |
| CDY42774 | Canola | mitochondrion | 86.89 | 89.18 |
| Bra019138.1-P | Field mustard | plastid | 83.8 | 83.59 |
| CDY49466 | Canola | cytosol | 55.01 | 83.27 |
| Bra010446.1-P | Field mustard | mitochondrion | 81.75 | 81.75 |
| CDY66012 | Canola | mitochondrion | 76.35 | 81.37 |
| AT5G57270.5 | Thale cress | golgi | 76.86 | 77.06 |
| CDY57290 | Canola | cytosol | 64.01 | 71.97 |
| AT4G30060.1 | Thale cress | golgi | 62.98 | 61.1 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 59.9 | 59.14 |
| KRH19073 | Soybean | golgi | 58.61 | 58.02 |
| Solyc07g008940.2.1 | Tomato | golgi | 58.61 | 58.02 |
| HORVU2Hr1G100480.3 | Barley | cytosol | 48.33 | 57.85 |
| PGSC0003DMT400073984 | Potato | golgi | 58.35 | 57.76 |
| VIT_11s0103g00490.t01 | Wine grape | golgi, plastid | 58.87 | 56.82 |
| Zm00001d024348_P002 | Maize | mitochondrion | 52.44 | 55.14 |
| KRH02808 | Soybean | golgi | 58.61 | 54.29 |
| Zm00001d026261_P001 | Maize | golgi, mitochondrion | 52.96 | 53.79 |
| AT4G31350.4 | Thale cress | golgi | 51.93 | 53.72 |
| KXG24737 | Sorghum | golgi | 52.7 | 53.52 |
| EES12818 | Sorghum | golgi | 52.44 | 52.71 |
| TraesCS2D01G428700.2 | Wheat | mitochondrion | 51.16 | 52.37 |
| Zm00001d002382_P002 | Maize | golgi, mitochondrion | 51.67 | 51.94 |
| TraesCS2B01G452200.4 | Wheat | mitochondrion | 50.64 | 51.84 |
| TraesCS2A01G430900.2 | Wheat | mitochondrion | 50.39 | 50.78 |
| Os08t0225400-01 | Rice | cytosol, golgi | 52.19 | 49.15 |
| AT5G11730.1 | Thale cress | golgi | 36.25 | 36.53 |
| AT5G25970.2 | Thale cress | golgi | 35.48 | 35.66 |
| AT3G21310.1 | Thale cress | golgi | 34.96 | 35.51 |
| AT1G10880.1 | Thale cress | golgi | 32.9 | 33.16 |
| AT1G51770.1 | Thale cress | golgi | 34.19 | 32.76 |
| AT1G68390.1 | Thale cress | plastid | 33.68 | 32.11 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 34.45 | 32.06 |
| AT1G10280.1 | Thale cress | golgi | 33.16 | 31.31 |
| AT5G14550.1 | Thale cress | mitochondrion | 29.56 | 30.5 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 30.59 | 30.36 |
| AT5G16170.1 | Thale cress | golgi | 31.11 | 29.44 |
| AT1G62305.1 | Thale cress | golgi | 28.53 | 29.37 |
| AT1G11940.1 | Thale cress | golgi | 28.02 | 28.46 |
Protein Annotations
| MapMan:35.1 | EntrezGene:828693 | ProteinID:AEE85126.1 | ArrayExpress:AT4G25870 | EnsemblPlantsGene:AT4G25870 | RefSeq:AT4G25870 |
| TAIR:AT4G25870 | RefSeq:AT4G25870-TAIR-G | EnsemblPlants:AT4G25870.1 | TAIR:AT4G25870.1 | EMBL:BT015319 | EMBL:BT020605 |
| ProteinID:CAB39608.1 | ProteinID:CAB79442.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_14 | EMBL:KJ138737 |
| RefSeq:NP_194317.1 | PFAM:PF02485 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF1 | UniProt:Q9SVZ8 | TMHMM:TMhelix |
| UniParc:UPI00000A2E0C | SEG:seg | : | : | : | : |
Description
At4g25870 [Source:UniProtKB/TrEMBL;Acc:Q9SVZ8]
Coordinates
chr4:-:13149170..13152279
Molecular Weight (calculated)
45017.8 Da
IEP (calculated)
7.251
GRAVY (calculated)
-0.358
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MGETQKILQG PRHHTSLKKP LWVVLTVSVT SMLLICTHMY PKHGKSSSCH GLYSTRGCED ALSKWLPVHV RKFTDEEIAA RAVVRDILRT PPFITNNSKI
101: AFLFLTPGTL PFEKLWDEFF KGHEGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLVSESCI PLHTFDYTYR
201: YLLYSNVSFI ESFVDPGPHG TGRHMEHMLP EIAKEDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFN MIDPMGISNW
301: SVTFVDWSER RWHPKTYGGN EISLEFMKNV TSEDMSVHVT SVGKHGDELH WPCTWNGIKR PCYLFARKFH PDTLDTLVNL FPNYTNTAV
101: AFLFLTPGTL PFEKLWDEFF KGHEGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLVSESCI PLHTFDYTYR
201: YLLYSNVSFI ESFVDPGPHG TGRHMEHMLP EIAKEDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFN MIDPMGISNW
301: SVTFVDWSER RWHPKTYGGN EISLEFMKNV TSEDMSVHVT SVGKHGDELH WPCTWNGIKR PCYLFARKFH PDTLDTLVNL FPNYTNTAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.