Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- golgi 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08638 | Canola | mitochondrion | 84.39 | 84.17 |
| Bra034487.1-P | Field mustard | mitochondrion | 82.8 | 83.91 |
| CDY24895 | Canola | mitochondrion | 82.8 | 83.91 |
| AT1G11940.1 | Thale cress | golgi | 73.81 | 72.85 |
| VIT_10s0116g00980.t01 | Wine grape | golgi | 62.7 | 62.37 |
| Solyc02g036250.1.1 | Tomato | cytosol | 25.13 | 60.51 |
| PGSC0003DMT400042390 | Potato | golgi | 59.52 | 60.0 |
| KRH11480 | Soybean | mitochondrion | 57.67 | 57.82 |
| Solyc02g080970.2.1 | Tomato | plastid | 59.26 | 57.29 |
| PGSC0003DMT400055283 | Potato | golgi | 53.7 | 54.57 |
| HORVU3Hr1G065000.4 | Barley | cytosol | 45.5 | 53.25 |
| GSMUA_Achr3P28930_001 | Banana | golgi | 52.91 | 52.22 |
| KRH36494 | Soybean | mitochondrion | 57.67 | 51.78 |
| GSMUA_Achr9P21910_001 | Banana | golgi | 51.32 | 50.26 |
| Os01t0695200-01 | Rice | plastid | 46.56 | 48.48 |
| TraesCS3D01G258800.1 | Wheat | golgi, mitochondrion, plastid | 49.47 | 47.46 |
| TraesCS3A01G258700.1 | Wheat | golgi, mitochondrion, plastid | 49.21 | 47.33 |
| Zm00001d043768_P001 | Maize | golgi, mitochondrion, plastid | 48.68 | 47.06 |
| AT5G14550.1 | Thale cress | mitochondrion | 46.83 | 46.95 |
| KXG33181 | Sorghum | golgi, mitochondrion, plastid | 47.88 | 46.29 |
| TraesCS3B01G291600.1 | Wheat | plastid | 49.74 | 45.41 |
| AT3G21310.1 | Thale cress | golgi | 30.69 | 30.29 |
| AT4G31350.4 | Thale cress | golgi | 29.89 | 30.05 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 30.95 | 29.7 |
| AT5G11730.1 | Thale cress | golgi | 30.16 | 29.53 |
| AT4G30060.1 | Thale cress | golgi | 31.22 | 29.43 |
| AT5G25970.2 | Thale cress | golgi | 29.89 | 29.2 |
| AT1G51770.1 | Thale cress | golgi | 30.95 | 28.82 |
| AT1G10880.1 | Thale cress | golgi | 29.37 | 28.76 |
| AT1G10280.1 | Thale cress | golgi | 31.22 | 28.64 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 29.63 | 28.57 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 29.37 | 28.53 |
| AT5G16170.1 | Thale cress | golgi | 30.69 | 28.22 |
| AT5G57270.5 | Thale cress | golgi | 28.57 | 27.84 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 30.42 | 27.51 |
| AT1G68390.1 | Thale cress | plastid | 29.1 | 26.96 |
Protein Annotations
| MapMan:35.1 | EntrezGene:842528 | ProteinID:AEE33951.1 | ArrayExpress:AT1G62305 | EnsemblPlantsGene:AT1G62305 | RefSeq:AT1G62305 |
| TAIR:AT1G62305 | RefSeq:AT1G62305-TAIR-G | EnsemblPlants:AT1G62305.1 | TAIR:AT1G62305.1 | EMBL:AY648315 | EMBL:AY924713 |
| EMBL:BT020621 | EMBL:BT021929 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_14 | EMBL:KJ138956 | RefSeq:NP_683459.2 | PFAM:PF02485 |
| PO:PO:0000293 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF2 | UniProt:Q6DST3 | TMHMM:TMhelix | UniParc:UPI000034F4D7 |
| SEG:seg | : | : | : | : | : |
Description
At1g62305 [Source:UniProtKB/TrEMBL;Acc:Q6DST3]
Coordinates
chr1:-:23026730..23029531
Molecular Weight (calculated)
44207.2 Da
IEP (calculated)
9.989
GRAVY (calculated)
-0.303
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRLPSSRRG VVWFRWKILI TISTALCILA LFCINRQSNS TATTTTLSSS LSVARSRIPL VKYSGDRPKL AFLFLARRDL PLDFLWDRFF KSADQRNFSI
101: YVHSIPGFVF DESSTRSHFF YNRQLKNSIE VVWGESSMIA AERLLLASAL EDPSNQRFVL LSDSCVPLYD FGYIYRYLVS SPKSFVDSFL DKDNRYTMKM
201: FPVIRKEKWR KGSQWISLIR SHAEVIVNDD TVFPVFQKFC KRSLPLDPRK NWLYLKKRRH NCIPDEHYVQ TLLTMRGLEN EMERRTVTYT TWNLSAKKAE
301: AKSWHPLTFT SDNCGPEEIE GIKKINHVYY ESEYRTEWCR ANSKPVPCFL FARKFTRGAA MRLLSEGLIE SSIDTTTF
101: YVHSIPGFVF DESSTRSHFF YNRQLKNSIE VVWGESSMIA AERLLLASAL EDPSNQRFVL LSDSCVPLYD FGYIYRYLVS SPKSFVDSFL DKDNRYTMKM
201: FPVIRKEKWR KGSQWISLIR SHAEVIVNDD TVFPVFQKFC KRSLPLDPRK NWLYLKKRRH NCIPDEHYVQ TLLTMRGLEN EMERRTVTYT TWNLSAKKAE
301: AKSWHPLTFT SDNCGPEEIE GIKKINHVYY ESEYRTEWCR ANSKPVPCFL FARKFTRGAA MRLLSEGLIE SSIDTTTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.