Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- golgi 4
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P21910_001 | Banana | golgi | 75.46 | 74.87 |
| Solyc02g036250.1.1 | Tomato | cytosol | 24.54 | 59.87 |
| HORVU3Hr1G065000.4 | Barley | cytosol | 49.61 | 58.82 |
| VIT_10s0116g00980.t01 | Wine grape | golgi | 56.4 | 56.84 |
| Bra034487.1-P | Field mustard | mitochondrion | 54.05 | 55.5 |
| CDY24895 | Canola | mitochondrion | 54.05 | 55.5 |
| PGSC0003DMT400042390 | Potato | golgi | 53.26 | 54.4 |
| CDY08638 | Canola | mitochondrion | 53.79 | 54.35 |
| Os01t0695200-01 | Rice | plastid | 51.44 | 54.27 |
| Zm00001d043768_P001 | Maize | golgi, mitochondrion, plastid | 54.83 | 53.71 |
| TraesCS3A01G258700.1 | Wheat | golgi, mitochondrion, plastid | 54.83 | 53.44 |
| TraesCS3D01G258800.1 | Wheat | golgi, mitochondrion, plastid | 54.83 | 53.3 |
| KXG33181 | Sorghum | golgi, mitochondrion, plastid | 54.31 | 53.2 |
| PGSC0003DMT400055283 | Potato | golgi | 51.44 | 52.96 |
| AT1G62305.1 | Thale cress | golgi | 52.22 | 52.91 |
| Solyc02g080970.2.1 | Tomato | plastid | 53.79 | 52.69 |
| KRH11480 | Soybean | mitochondrion | 51.7 | 52.52 |
| AT1G11940.1 | Thale cress | golgi | 51.44 | 51.44 |
| CDY31228 | Canola | golgi | 49.35 | 51.08 |
| TraesCS3B01G291600.1 | Wheat | plastid | 54.57 | 50.48 |
| Bra016802.1-P | Field mustard | golgi | 49.35 | 50.27 |
| CDY21023 | Canola | golgi | 49.35 | 50.27 |
| CDY34605 | Canola | golgi | 47.0 | 47.62 |
| KRH36494 | Soybean | mitochondrion | 52.22 | 47.51 |
| GSMUA_Achr2P14170_001 | Banana | mitochondrion | 44.91 | 46.87 |
| Bra031797.1-P | Field mustard | cytosol | 40.21 | 45.56 |
| GSMUA_Achr8P29190_001 | Banana | cytosol | 26.63 | 37.36 |
| GSMUA_Achr7P08690_001 | Banana | endoplasmic reticulum, golgi | 28.72 | 37.16 |
| GSMUA_Achr6P09800_001 | Banana | cytosol | 26.89 | 37.05 |
| GSMUA_Achr11P... | Banana | cytosol | 27.94 | 36.77 |
| GSMUA_Achr7P23520_001 | Banana | cytosol | 28.2 | 36.61 |
| CDY66259 | Canola | cytosol | 40.21 | 35.81 |
| GSMUA_Achr1P04590_001 | Banana | cytosol | 28.2 | 35.64 |
| GSMUA_Achr10P... | Banana | cytosol | 25.85 | 35.23 |
| GSMUA_Achr8P31730_001 | Banana | cytosol | 24.28 | 33.94 |
| GSMUA_Achr1P04580_001 | Banana | cytosol | 26.11 | 33.78 |
| GSMUA_Achr1P14240_001 | Banana | golgi | 28.98 | 31.01 |
| GSMUA_Achr5P24160_001 | Banana | mitochondrion | 27.68 | 30.2 |
| GSMUA_Achr4P12520_001 | Banana | golgi | 30.81 | 30.18 |
| GSMUA_Achr4P05750_001 | Banana | golgi | 30.29 | 29.67 |
| GSMUA_Achr3P25730_001 | Banana | golgi | 26.89 | 28.69 |
| GSMUA_Achr8P08460_001 | Banana | golgi | 27.15 | 28.65 |
| GSMUA_Achr5P01370_001 | Banana | golgi | 26.63 | 27.87 |
| GSMUA_Achr8P32350_001 | Banana | golgi, mitochondrion | 27.42 | 26.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P28930_001 | EnsemblPlants:GSMUA_Achr3T28930_001 | EnsemblPlantsGene:GSMUA_Achr3G28930_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016740 | InterPro:Glyco_trans_14 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF2 |
| PFAM:PF02485 | SEG:seg | UniParc:UPI000295A354 | UniProt:M0SIQ9 | MapMan:35.1 | : |
Description
DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G28930_001]
Coordinates
chr3:-:28288512..28298794
Molecular Weight (calculated)
43950.0 Da
IEP (calculated)
8.759
GRAVY (calculated)
-0.143
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKRAPSSSS SLALAALPVA RSRLRLGLQL ILCVSVLACT LTLIRICSRS PSPVDLVEVP LLAPPKIAFL FLARSNLPLD FFCCWCSVQK AEEEKYSIYI
101: HSEPGFVFDR TTTRSPFFFG RQLQNGIRVV WGEATMIEAE RLLLAVALKD PANQRFALIS DSCVPLYNFS YIYSYMMSSS KSFVDSFLDR KDVRYNAKMF
201: PTIPKDRWRK GSQWITLVRK HAETLVADTI VFPVFSKFCK RQTGLALGAK QNNKEAAQKE HDCIPDEHYV QTLLSMSHLE DELERRTLTY TSWNQSIDTK
301: DKRSWHPKTF EFPDASLEHI MEIRNINHVY YETEYRTEWC QCNGTFVPCF LFARKFSRSA AMRILNEGLL GPFDAGAFLF TNS
101: HSEPGFVFDR TTTRSPFFFG RQLQNGIRVV WGEATMIEAE RLLLAVALKD PANQRFALIS DSCVPLYNFS YIYSYMMSSS KSFVDSFLDR KDVRYNAKMF
201: PTIPKDRWRK GSQWITLVRK HAETLVADTI VFPVFSKFCK RQTGLALGAK QNNKEAAQKE HDCIPDEHYV QTLLSMSHLE DELERRTLTY TSWNQSIDTK
301: DKRSWHPKTF EFPDASLEHI MEIRNINHVY YETEYRTEWC QCNGTFVPCF LFARKFSRSA AMRILNEGLL GPFDAGAFLF TNS
001: MPRLPSSRRG VVWFRWKILI TISTALCILA LFCINRQSNS TATTTTLSSS LSVARSRIPL VKYSGDRPKL AFLFLARRDL PLDFLWDRFF KSADQRNFSI
101: YVHSIPGFVF DESSTRSHFF YNRQLKNSIE VVWGESSMIA AERLLLASAL EDPSNQRFVL LSDSCVPLYD FGYIYRYLVS SPKSFVDSFL DKDNRYTMKM
201: FPVIRKEKWR KGSQWISLIR SHAEVIVNDD TVFPVFQKFC KRSLPLDPRK NWLYLKKRRH NCIPDEHYVQ TLLTMRGLEN EMERRTVTYT TWNLSAKKAE
301: AKSWHPLTFT SDNCGPEEIE GIKKINHVYY ESEYRTEWCR ANSKPVPCFL FARKFTRGAA MRLLSEGLIE SSIDTTTF
101: YVHSIPGFVF DESSTRSHFF YNRQLKNSIE VVWGESSMIA AERLLLASAL EDPSNQRFVL LSDSCVPLYD FGYIYRYLVS SPKSFVDSFL DKDNRYTMKM
201: FPVIRKEKWR KGSQWISLIR SHAEVIVNDD TVFPVFQKFC KRSLPLDPRK NWLYLKKRRH NCIPDEHYVQ TLLTMRGLEN EMERRTVTYT TWNLSAKKAE
301: AKSWHPLTFT SDNCGPEEIE GIKKINHVYY ESEYRTEWCR ANSKPVPCFL FARKFTRGAA MRLLSEGLIE SSIDTTTF
Arabidopsis Description
At1g62305 [Source:UniProtKB/TrEMBL;Acc:Q6DST3]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.