Factsheet for GSMUA_Achr6P09800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03410.t01	Wine grape	cytosol	66.55	62.71
VIT_17s0000g03400.t01	Wine grape	cytosol	65.83	61.82
GSMUA_Achr8P29190_001	Banana	cytosol	56.47	57.51
PGSC0003DMT400014396	Potato	cytosol	60.07	56.42
GSMUA_Achr7P23520_001	Banana	cytosol	57.91	54.58
GSMUA_Achr8P31730_001	Banana	cytosol	53.6	54.38
PGSC0003DMT400037735	Potato	cytosol	39.93	53.88
TraesCS1D01G394500.1	Wheat	mitochondrion	55.76	53.08
HORVU1Hr1G085260.1	Barley	cytosol	43.53	50.42
KRH60391	Soybean	golgi, plastid	63.67	47.07
KRH41690	Soybean	golgi	62.59	46.77
GSMUA_Achr1P04590_001	Banana	cytosol	50.36	46.2
GSMUA_Achr1P04580_001	Banana	cytosol	48.2	45.27
GSMUA_Achr1P14240_001	Banana	golgi	58.27	45.25
VIT_01s0011g03850.t01	Wine grape	golgi, plastid	64.75	44.44
CDX73016	Canola	mitochondrion	55.4	44.38
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	55.4	44.0
PGSC0003DMT400037733	Potato	golgi	59.71	43.12
GSMUA_Achr8P08460_001	Banana	golgi	56.12	42.98
Solyc05g009120.2.1	Tomato	nucleus	60.07	42.82
GSMUA_Achr5P01370_001	Banana	golgi	55.76	42.35
GSMUA_Achr10P...	Banana	cytosol	41.73	41.28
Solyc05g009110.1.1	Tomato	golgi	56.83	41.04
GSMUA_Achr11P...	Banana	cytosol	42.81	40.89
KRH39163	Soybean	golgi	66.19	40.8
GSMUA_Achr3P25730_001	Banana	golgi	52.52	40.67
GSMUA_Achr7P08690_001	Banana	endoplasmic reticulum, golgi	43.17	40.54
PGSC0003DMT400013770	Potato	golgi	60.07	40.53
Solyc12g036400.1.1	Tomato	extracellular	59.71	40.29
KRH48513	Soybean	golgi	64.75	40.27
KRH35920	Soybean	golgi, plasma membrane	60.07	40.24
KRG90861	Soybean	golgi, plasma membrane	60.43	39.91
GSMUA_Achr8P32350_001	Banana	golgi, mitochondrion	55.76	38.94
KRH38159	Soybean	golgi	60.79	38.67
Solyc03g119260.2.1	Tomato	golgi, nucleus, plasma membrane	58.63	38.26
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	59.71	37.22
Os02t0327500-01	Rice	golgi	58.63	37.13
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	55.76	37.08
Zm00001d053393_P002	Maize	golgi, plastid	59.35	36.75
GSMUA_Achr5P24160_001	Banana	mitochondrion	44.6	35.33
OQU84731	Sorghum	plastid	60.43	35.0
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	56.83	34.05
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	57.19	34.05
GSMUA_Achr4P12520_001	Banana	golgi	45.32	32.23
GSMUA_Achr4P05750_001	Banana	golgi	43.17	30.69
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	48.56	28.72
GSMUA_Achr2P14170_001	Banana	mitochondrion	37.41	28.34
GSMUA_Achr9P21910_001	Banana	golgi	38.13	27.46
GSMUA_Achr3P28930_001	Banana	golgi	37.05	26.89
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P09800_001	EnsemblPlants:GSMUA_Achr6T09800_001	EnsemblPlantsGene:GSMUA_Achr6G09800_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7
PFAM:PF02485	UniParc:UPI000294C299	UniProt:M0T5M9	MapMan:35.1	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G09800_001]

Coordinates

chr6:+:6594000..6595321

Molecular Weight (calculated)

32399.0 Da

IEP (calculated)

9.704

GRAVY (calculated)

-0.301

Length

278 amino acids

Sequence
(BLAST)

001: MHDMEDEELL WRASMVPRIR KLPFKHAQKV AFLFLTRGNL PLAPLWEEFF KGNEGSYSIY VHTDPSFDWS VPKSSVFYGR RIPSQVVRWG TISMLDAERR
101: LLANALLDFS NRRFVLLSES CIPLFNFPTV YSYLINSTEV FVEVYDDPGP NGRGRYKSTL KPGIEFKQWR KGSQWFAVDR GLAMEIVSDE KYFPLFQRYC
201: RPSCLADEHY LPTLMNVRSF WGTANRSLTW ADWMRNGSAC SYNGRTTRIC YLFGRKFLPN SLNRLVRLAP KLMDFGGS

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.