Factsheet for VIT_17s0000g03410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
plasma membrane 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03400.t01	Wine grape	cytosol	77.97	77.7
GSMUA_Achr6P09800_001	Banana	cytosol	62.71	66.55
VIT_14s0006g02700.t01	Wine grape	cytosol	62.03	61.82
VIT_17s0000g03420.t01	Wine grape	cytosol	59.32	59.52
VIT_01s0011g03840.t01	Wine grape	cytosol	59.32	59.12
TraesCS1D01G394500.1	Wheat	mitochondrion	56.61	57.19
VIT_09s0002g02660.t01	Wine grape	cytosol	55.59	55.78
HORVU1Hr1G085260.1	Barley	cytosol	44.41	54.58
VIT_01s0011g03850.t01	Wine grape	golgi, plastid	70.51	51.36
CDX73016	Canola	mitochondrion	56.61	48.13
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	56.27	47.43
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	58.98	45.19
VIT_12s0035g01710.t01	Wine grape	golgi	55.59	43.27
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	57.63	40.67
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	60.68	40.13
Os02t0327500-01	Rice	golgi	59.66	40.09
Zm00001d053393_P002	Maize	golgi, plastid	59.32	38.98
OQU84731	Sorghum	plastid	60.68	37.29
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	40.0	36.42
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	56.27	35.78
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	56.61	35.76
VIT_04s0008g02630.t01	Wine grape	golgi	43.39	32.74
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	42.03	30.77
VIT_10s0116g00980.t01	Wine grape	golgi	39.32	30.53
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	48.47	30.43
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100252627	wikigene:100252627	MapMan:35.1	ProteinID:CBI15480	ProteinID:CBI15480.3	UniProt:D7SJ19
EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020
GO:GO:0016740	InterPro:Glyco_trans_14	EntrezGene:LOC100252627	wikigene:LOC100252627	PFAM:PF02485	PANTHER:PTHR31042
PANTHER:PTHR31042:SF7	UniParc:UPI0001BE0A68	ArrayExpress:VIT_17s0000g03410	EnsemblPlantsGene:VIT_17s0000g03410	EnsemblPlants:VIT_17s0000g03410.t01	RefSeq:XP_002276811
RefSeq:XP_002276811.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:3280282..3282615

Molecular Weight (calculated)

34359.4 Da

IEP (calculated)

9.486

GRAVY (calculated)

-0.183

Length

295 amino acids

Sequence
(BLAST)

001: MKDAELLWRA SMVPRVGEFP FKRVPKIAFL FLTRGSLPLA PLWEMFFRGH EALYSIYVHS DPSFNRTVPK SSVFYGRSIP SQEVQWGNFS MLEAERRLLA
101: NALLDISNHR FVLLSESCIP LFNFSTIYSY LMASTKSFIE AYDLPGPVGR ARYDHRMKPI VTIGQWRKGS QWFEMDRGLA IEVISDRKYF AVFRECCEAS
201: CYADEHYLPT LVSIEFWRRN ANRSLTWVDW SNGGAHPAGF WRRDVTVEFL QSLRTESHCQ YNGNNTDICF LFARKFLPGT LNRLLRVAPK LMKFN

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.