Factsheet for VIT_01s0011g03850.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 5
mitochondrion 2
golgi 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03400.t01	Wine grape	cytosol	53.58	73.31
VIT_17s0000g03410.t01	Wine grape	cytosol	51.36	70.51
GSMUA_Achr6P09800_001	Banana	cytosol	44.44	64.75
VIT_14s0006g02700.t01	Wine grape	cytosol	45.93	62.84
VIT_17s0000g03420.t01	Wine grape	cytosol	44.94	61.9
VIT_01s0011g03840.t01	Wine grape	cytosol	44.44	60.81
TraesCS1D01G394500.1	Wheat	mitochondrion	42.47	58.9
VIT_09s0002g02660.t01	Wine grape	cytosol	40.74	56.12
HORVU1Hr1G085260.1	Barley	cytosol	33.09	55.83
CDX73016	Canola	mitochondrion	45.43	53.03
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	45.68	52.86
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	46.91	49.35
VIT_12s0035g01710.t01	Wine grape	golgi	44.2	47.23
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	48.15	46.65
Os02t0327500-01	Rice	golgi	47.16	43.51
Zm00001d053393_P002	Maize	golgi, plastid	45.68	41.2
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	44.94	40.81
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	46.42	40.52
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	46.67	40.47
OQU84731	Sorghum	plastid	47.41	40.0
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	28.4	35.49
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	40.0	34.47
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	33.83	33.99
VIT_04s0008g02630.t01	Wine grape	golgi	31.85	32.99
VIT_10s0116g00980.t01	Wine grape	golgi	28.64	30.53
CDX73017	Canola	cytosol	0.74	21.43

Protein Annotations

EntrezGene:100245576	MapMan:35.1	ProteinID:CCB50893	ProteinID:CCB50893.1	UniProt:F6HFM7	EMBL:FN595752
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	InterPro:Glyco_trans_14	PFAM:PF02485	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7	TMHMM:TMhelix
UniParc:UPI00015C8037	ArrayExpress:VIT_01s0011g03850	EnsemblPlantsGene:VIT_01s0011g03850	EnsemblPlants:VIT_01s0011g03850.t01	RefSeq:XP_010644813.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:3519426..3521876

Molecular Weight (calculated)

46834.0 Da

IEP (calculated)

9.577

GRAVY (calculated)

-0.334

Length

405 amino acids

Sequence
(BLAST)

001: MKSQNQNSLA TTINLLGSRW NPLHLFSCFF FFAFGLTFGI ILSFNLKNFS FNLQVTQSSP SPSASASAPP PSPLVSPLPA STYPTNETSK AGRRIGLSEY
101: MKPPNAMHDM DDEELPWRAS MAPQIREFPF KRVPKVAFMF LTKGPLPLAP LWELFFKGHE GLYSIYVHSH PSFNETEPEN SVFHDRRIPS KEVQWGKFNM
201: IEAERRLLAN ALLDFSNYHF VLLSESCIPL FNFSTIYSYL MNSTRNYVQT YDFPGPVGRG RYKEQMYPTI TIEQWRKGSQ WFAVDRNLAT EIISDQTYFP
301: IFQKHCKSSC YADEHYLPTF VGIKFWERSA NRSLTWVDWS RGGAHPARFM RWDVTIESLK RLRSEGRCDY NGKSTNICFL FARKVMPSAL ERLLRFAPKV
401: MHFNS

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.