Factsheet for VIT_17s0000g03400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03410.t01	Wine grape	cytosol	77.7	77.97
GSMUA_Achr6P09800_001	Banana	cytosol	61.82	65.83
VIT_14s0006g02700.t01	Wine grape	cytosol	64.19	64.19
VIT_17s0000g03420.t01	Wine grape	cytosol	61.49	61.9
VIT_01s0011g03840.t01	Wine grape	cytosol	60.81	60.81
TraesCS1D01G394500.1	Wheat	mitochondrion	58.78	59.59
HORVU1Hr1G085260.1	Barley	cytosol	44.93	55.42
VIT_09s0002g02660.t01	Wine grape	cytosol	54.05	54.42
VIT_01s0011g03850.t01	Wine grape	golgi, plastid	73.31	53.58
CDX73016	Canola	mitochondrion	59.8	51.01
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	59.8	50.57
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	58.45	44.94
VIT_12s0035g01710.t01	Wine grape	golgi	57.43	44.85
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	59.12	41.87
Os02t0327500-01	Rice	golgi	59.8	40.32
Zm00001d053393_P002	Maize	golgi, plastid	60.14	39.64
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	59.46	39.46
OQU84731	Sorghum	plastid	60.81	37.5
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	40.88	37.35
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	58.45	37.28
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	58.78	37.26
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	44.59	32.75
VIT_04s0008g02630.t01	Wine grape	golgi	43.24	32.74
VIT_10s0116g00980.t01	Wine grape	golgi	40.54	31.58
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	49.32	31.06
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100247520	wikigene:100247520	MapMan:35.1	ProteinID:CCB43233	ProteinID:CCB43233.1	UniProt:F6GTN7
EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020
GO:GO:0016740	InterPro:Glyco_trans_14	EntrezGene:LOC100247520	wikigene:LOC100247520	PFAM:PF02485	PANTHER:PTHR31042
PANTHER:PTHR31042:SF7	UniParc:UPI000210893C	ArrayExpress:VIT_17s0000g03400	EnsemblPlantsGene:VIT_17s0000g03400	EnsemblPlants:VIT_17s0000g03400.t01	RefSeq:XP_002276828
RefSeq:XP_002276828.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:3272925..3274938

Molecular Weight (calculated)

34637.1 Da

IEP (calculated)

10.665

GRAVY (calculated)

-0.313

Length

296 amino acids

Sequence
(BLAST)

001: MTDEELLWRA SMVPRVGGFP FKRVPKVAFL FLTRGPLPLA PFWELFFKGH EGRYSIYVHS HPSFNATLVP QSSVFHGRRI PSKEVQWGKF NMVEAERRLL
101: ANALLDISNQ RFVLLSESCI PLYNFSTIYS YLMGSKKSFV ESYDLPGPVG RGRYNPRMKP LIKMEQWRKG SQWFEMDRGL AIQVISDRKY FPVFQKFCTP
201: PCYADEHYLP TLVSVKFWRR NSNRSLTWVD WSHGGAHPAR FWRVAVTVDF LKKLRNGSHC HYNGKSSNTC FMFARKFLPN ALDRLLRFGP KLMKFN

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.