Factsheet for VIT_17s0000g03420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02700.t01	Wine grape	cytosol	71.09	70.61
VIT_01s0011g03840.t01	Wine grape	cytosol	66.33	65.88
VIT_17s0000g03400.t01	Wine grape	cytosol	61.9	61.49
VIT_17s0000g03410.t01	Wine grape	cytosol	59.52	59.32
VIT_09s0002g02660.t01	Wine grape	cytosol	56.8	56.8
VIT_01s0011g03850.t01	Wine grape	golgi, plastid	61.9	44.94
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	57.48	43.9
VIT_12s0035g01710.t01	Wine grape	golgi	55.78	43.27
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	37.76	34.26
VIT_04s0008g02630.t01	Wine grape	golgi	41.5	31.2
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	40.48	29.53
VIT_10s0116g00980.t01	Wine grape	golgi	36.05	27.89

Protein Annotations

EntrezGene:100257764	wikigene:100257764	MapMan:35.1	ProteinID:CBI15479	ProteinID:CBI15479.3	UniProt:D7SJ18
EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020
GO:GO:0016740	InterPro:Glyco_trans_14	EntrezGene:LOC100257764	wikigene:LOC100257764	PFAM:PF02485	PANTHER:PTHR31042
PANTHER:PTHR31042:SF20	UniParc:UPI0001BE0A67	ArrayExpress:VIT_17s0000g03420	EnsemblPlantsGene:VIT_17s0000g03420	EnsemblPlants:VIT_17s0000g03420.t01	RefSeq:XP_002276791
RefSeq:XP_002276791.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:3284712..3285857

Molecular Weight (calculated)

34338.0 Da

IEP (calculated)

7.936

GRAVY (calculated)

-0.335

Length

294 amino acids

Sequence
(BLAST)

001: MDDDELFWRA SMVPRIQQFP YENVPKVAFM FLTKGPIPLG PLWDLFFKGH EGFYSIYVHP HPSYNDSVPE DSVFHGRRIP SKAVKWGRAT MIDAERRLLA
101: NALLDFSNER FVLLSETCIP LFNFTTIYSY IINSNQSFIA SYDDPRKVGR GRYNPQMSPT INISEWRKGS QWFEVHRELA IEIVSDKKYY PVFREHCHVP
201: CYMDEHYIPT LINILAPEKN SNRTITWVDW SKSGPHPGRF IRQDVTLEFL NQTRFGTNCT YGGNTTSMCF LFARKFVPNT LQPLLQLLSL DFSH

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.