Factsheet for VIT_01s0011g03840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02700.t01	Wine grape	cytosol	67.57	67.57
VIT_17s0000g03420.t01	Wine grape	cytosol	65.88	66.33
GSMUA_Achr8P31730_001	Banana	cytosol	60.47	65.33
VIT_17s0000g03400.t01	Wine grape	cytosol	60.81	60.81
VIT_17s0000g03410.t01	Wine grape	cytosol	59.12	59.32
Solyc05g009130.2.1	Tomato	golgi	73.99	58.4
VIT_09s0002g02660.t01	Wine grape	cytosol	57.77	58.16
Bra019894.1-P	Field mustard	golgi	65.2	51.19
CDY19328	Canola	golgi, mitochondrion	64.86	50.79
AT1G10880.1	Thale cress	golgi	65.54	50.26
CDY20597	Canola	golgi	57.09	49.71
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	60.47	46.49
VIT_12s0035g01710.t01	Wine grape	golgi	57.09	44.59
VIT_01s0011g03850.t01	Wine grape	golgi, plastid	60.81	44.44
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	39.86	36.42
VIT_04s0008g02630.t01	Wine grape	golgi	41.89	31.71
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	41.22	30.27
VIT_10s0116g00980.t01	Wine grape	golgi	38.85	30.26
CDX97918	Canola	golgi	60.81	28.53

Protein Annotations

EntrezGene:100250702	wikigene:100250702	MapMan:35.1	ProteinID:CBI26990	ProteinID:CBI26990.3	UniProt:D7T919
EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020
GO:GO:0016740	InterPro:Glyco_trans_14	EntrezGene:LOC100250702	wikigene:LOC100250702	PFAM:PF02485	PANTHER:PTHR31042
PANTHER:PTHR31042:SF17	UniParc:UPI0001BE2A36	ArrayExpress:VIT_01s0011g03840	EnsemblPlantsGene:VIT_01s0011g03840	EnsemblPlants:VIT_01s0011g03840.t01	RefSeq:XP_002279551
RefSeq:XP_002279551.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:3514066..3515031

Molecular Weight (calculated)

34635.5 Da

IEP (calculated)

9.530

GRAVY (calculated)

-0.344

Length

296 amino acids

Sequence
(BLAST)

001: MNDKELMWRA SMVPHFVDYP YDRTPKVAFM FLSRGRLPLA SLWEKFFKGH AGLYSIYLHT SPEFNTEMPE SSVFYKRRIP SKSVDWGKAT MVDAERRLLA
101: NALLDFSNER FVLLSETCIP LFNFTTIYKY LINSNHSFVS SFDDPRHIGR GRYNKRMFPT VTLPDWRKGS QWFEVHRKLA IEIVSDVTYY PIFQEHCRPP
201: CYMDEHYLAT LVNKLRPDLN SNRSITWVDW SRGGSHPTKF VRKDVSEAFL NQARHGFNCS YNSGLSSICF LFARKFHPST LEPLLRIAPS LLGFDP

Best Arabidopsis Sequence Match ( AT1G10880.1 )
(BLAST)

001: MKKQKITTFV KELNLRMNSK KEPISLRYIH ILGTVVFFSS VSSLVILLAF YLNQRLQTSL FLVEDYHTLS SNPLTSPSLS PPPSPSPRSS GSNIADEELM
101: WRAAMAPRSP MKNETHPKVA FMFLTRWNLP LSPLWEMFFK GHEGFYSIYV HTSPEFTQEP PESSVFYKKR IPSKAVEWGK CSMMDAEKRL ISHALLEPSN
201: ARFVLLSETC IPLFNFTTIY TYLTRSTRSF LGSFDDPRPM GRGRYTPKML PHVSLSDWRK GNQWFEISRR VAAEIVSDRR YYAVFKDHCR PPCYIDEHYL
301: PTLVNKICPE MNSNRTVTWV DWSRGGSHPA RFVRKDIRVG FLDRIRFGSN CSYEGEVTNV CFLFGRKFHV STLEPLMKIA PYLFGI

Arabidopsis Description

Core-2/I-branching beta-1,6-n-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WR07]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.