Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 3
- nucleus 2
- extracellular 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019894.1-P | Field mustard | golgi | 87.05 | 89.12 |
| CDY19328 | Canola | golgi, mitochondrion | 85.49 | 87.3 |
| CDY20597 | Canola | golgi | 72.28 | 82.06 |
| VIT_01s0011g03840.t01 | Wine grape | cytosol | 50.26 | 65.54 |
| GSMUA_Achr8P31730_001 | Banana | cytosol | 40.67 | 57.3 |
| Solyc05g009130.2.1 | Tomato | golgi | 51.81 | 53.33 |
| CDX97918 | Canola | golgi | 83.68 | 51.19 |
| AT5G11730.1 | Thale cress | golgi | 45.85 | 45.85 |
| AT5G25970.2 | Thale cress | golgi | 45.08 | 44.96 |
| AT3G21310.1 | Thale cress | golgi | 43.26 | 43.6 |
| AT5G16170.1 | Thale cress | golgi | 46.37 | 43.55 |
| AT1G68390.1 | Thale cress | plastid | 43.78 | 41.42 |
| AT1G10280.1 | Thale cress | golgi | 42.75 | 40.05 |
| AT1G51770.1 | Thale cress | golgi | 40.67 | 38.67 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 41.71 | 38.52 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 37.82 | 37.24 |
| AT4G31350.4 | Thale cress | golgi | 36.01 | 36.97 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 33.16 | 32.9 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 33.42 | 32.74 |
| AT5G57270.5 | Thale cress | golgi | 32.38 | 32.22 |
| AT4G30060.1 | Thale cress | golgi | 32.9 | 31.67 |
| AT1G62305.1 | Thale cress | golgi | 28.76 | 29.37 |
| AT1G11940.1 | Thale cress | golgi | 28.5 | 28.72 |
| AT5G14550.1 | Thale cress | mitochondrion | 27.98 | 28.65 |
Protein Annotations
| EntrezGene:28717231 | MapMan:35.1 | ProteinID:AEE28659.2 | EMBL:AK228519 | ArrayExpress:AT1G10880 | EnsemblPlantsGene:AT1G10880 |
| RefSeq:AT1G10880 | TAIR:AT1G10880 | RefSeq:AT1G10880-TAIR-G | EnsemblPlants:AT1G10880.1 | TAIR:AT1G10880.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| GO:GO:0016757 | InterPro:Glyco_trans_14 | RefSeq:NP_001318976.1 | PFAM:PF02485 | PO:PO:0000005 | PANTHER:PTHR31042 |
| PANTHER:PTHR31042:SF17 | UniProt:Q0WR07 | TMHMM:TMhelix | UniParc:UPI0000DB52A6 | SEG:seg | : |
Description
Core-2/I-branching beta-1,6-n-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WR07]
Coordinates
chr1:-:3625623..3627082
Molecular Weight (calculated)
44706.1 Da
IEP (calculated)
9.907
GRAVY (calculated)
-0.272
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKQKITTFV KELNLRMNSK KEPISLRYIH ILGTVVFFSS VSSLVILLAF YLNQRLQTSL FLVEDYHTLS SNPLTSPSLS PPPSPSPRSS GSNIADEELM
101: WRAAMAPRSP MKNETHPKVA FMFLTRWNLP LSPLWEMFFK GHEGFYSIYV HTSPEFTQEP PESSVFYKKR IPSKAVEWGK CSMMDAEKRL ISHALLEPSN
201: ARFVLLSETC IPLFNFTTIY TYLTRSTRSF LGSFDDPRPM GRGRYTPKML PHVSLSDWRK GNQWFEISRR VAAEIVSDRR YYAVFKDHCR PPCYIDEHYL
301: PTLVNKICPE MNSNRTVTWV DWSRGGSHPA RFVRKDIRVG FLDRIRFGSN CSYEGEVTNV CFLFGRKFHV STLEPLMKIA PYLFGI
101: WRAAMAPRSP MKNETHPKVA FMFLTRWNLP LSPLWEMFFK GHEGFYSIYV HTSPEFTQEP PESSVFYKKR IPSKAVEWGK CSMMDAEKRL ISHALLEPSN
201: ARFVLLSETC IPLFNFTTIY TYLTRSTRSF LGSFDDPRPM GRGRYTPKML PHVSLSDWRK GNQWFEISRR VAAEIVSDRR YYAVFKDHCR PPCYIDEHYL
301: PTLVNKICPE MNSNRTVTWV DWSRGGSHPA RFVRKDIRVG FLDRIRFGSN CSYEGEVTNV CFLFGRKFHV STLEPLMKIA PYLFGI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.