Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009874.1-P | Field mustard | golgi | 83.98 | 84.2 |
| CDX88209 | Canola | golgi | 75.97 | 84.0 |
| CDX80552 | Canola | cytosol | 32.82 | 83.01 |
| AT5G11730.1 | Thale cress | golgi | 75.45 | 75.65 |
| EER93518 | Sorghum | golgi, plasma membrane, plastid | 60.21 | 60.36 |
| GSMUA_Achr1P14240_001 | Banana | golgi | 54.01 | 58.38 |
| TraesCS4A01G253400.1 | Wheat | golgi, plasma membrane, plastid | 58.14 | 57.54 |
| Zm00001d033892_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 54.26 | 57.53 |
| GSMUA_Achr3P25730_001 | Banana | golgi | 53.23 | 57.38 |
| TraesCS4D01G061000.1 | Wheat | golgi, plasma membrane, plastid | 57.88 | 57.14 |
| TraesCS4B01G062000.1 | Wheat | golgi, plasma membrane, plastid | 57.62 | 56.89 |
| AT3G21310.1 | Thale cress | golgi | 55.81 | 56.4 |
| HORVU4Hr1G010270.2 | Barley | golgi, peroxisome | 57.62 | 55.75 |
| EER93517 | Sorghum | golgi, mitochondrion, plasma membrane | 57.88 | 55.72 |
| EER93516 | Sorghum | golgi | 54.26 | 55.26 |
| Zm00001d033891_P001 | Maize | cytosol, golgi, plasma membrane | 56.33 | 54.09 |
| Zm00001d033890_P001 | Maize | golgi | 58.66 | 53.92 |
| AT1G51770.1 | Thale cress | golgi | 56.07 | 53.45 |
| Os03t0731050-00 | Rice | plastid | 56.33 | 50.93 |
| AT1G10880.1 | Thale cress | golgi | 44.96 | 45.08 |
| AT1G10280.1 | Thale cress | golgi | 46.77 | 43.93 |
| AT5G16170.1 | Thale cress | golgi | 45.48 | 42.82 |
| AT1G68390.1 | Thale cress | plastid | 43.93 | 41.67 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 42.12 | 41.58 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 42.64 | 39.47 |
| AT4G31350.4 | Thale cress | golgi | 35.92 | 36.97 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 35.66 | 35.48 |
| AT5G57270.5 | Thale cress | golgi | 35.4 | 35.31 |
| AT4G30060.1 | Thale cress | golgi | 35.4 | 34.16 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 34.63 | 34.01 |
| AT1G62305.1 | Thale cress | golgi | 29.2 | 29.89 |
| AT5G14550.1 | Thale cress | mitochondrion | 28.94 | 29.71 |
| AT1G11940.1 | Thale cress | golgi | 29.2 | 29.5 |
Protein Annotations
| MapMan:35.1 | EntrezGene:832666 | ProteinID:AED93506.1 | ProteinID:ANM69339.1 | ProteinID:ANM69340.1 | ArrayExpress:AT5G25970 |
| EnsemblPlantsGene:AT5G25970 | RefSeq:AT5G25970 | TAIR:AT5G25970 | RefSeq:AT5G25970-TAIR-G | EnsemblPlants:AT5G25970.2 | EMBL:DQ446984 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_14 | EMBL:KJ138664 | RefSeq:NP_001318653.1 | RefSeq:NP_001331025.1 |
| RefSeq:NP_197969.2 | PFAM:PF02485 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF54 | UniProt:Q1PDT4 | TMHMM:TMhelix |
| UniParc:UPI0000D5BD1A | SEG:seg | : | : | : | : |
Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q1PDT4]
Coordinates
chr5:+:9066278..9068511
Molecular Weight (calculated)
44328.7 Da
IEP (calculated)
8.360
GRAVY (calculated)
-0.017
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MQCSRVLQLE EGKEIVVTSS RTGLTKAFPY KLLLLLGFFL AFTVVLFFIS VSTIKYYGIN SVVTSVTSSF VPCHEKINDL DKWIKPLVVL MHNMSDEELL
101: WGASFMPRRK EYPFNRVPKI AFMFLTMGPL PLAPLWERLL KGHEKLYSVY IHSPVSSSAK FPASSVFYRR HIPSQVAEWG RMTMCDAERR LLANALLDIS
201: NEWFVLLSES CIPLFNFTTI YTYMTKSEHS FMGSFDDPGA YGRGRYHGNM APEVFIDQWR KGSQWFEINR ELAVSIVKDT LYYPKFKEFC QPACYVDEHY
301: FPTMLTIEKP AALANRSVTW VDWSRGGAHP ATFGAQDINE EFFARILKGD NCTYNGGYTS MCYLFARKFS PSALEPLVQI APKLLSS
101: WGASFMPRRK EYPFNRVPKI AFMFLTMGPL PLAPLWERLL KGHEKLYSVY IHSPVSSSAK FPASSVFYRR HIPSQVAEWG RMTMCDAERR LLANALLDIS
201: NEWFVLLSES CIPLFNFTTI YTYMTKSEHS FMGSFDDPGA YGRGRYHGNM APEVFIDQWR KGSQWFEINR ELAVSIVKDT LYYPKFKEFC QPACYVDEHY
301: FPTMLTIEKP AALANRSVTW VDWSRGGAHP ATFGAQDINE EFFARILKGD NCTYNGGYTS MCYLFARKFS PSALEPLVQI APKLLSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.