Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- golgi 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11878 | Canola | golgi | 90.98 | 90.75 |
| CDX88613 | Canola | golgi | 90.98 | 90.75 |
| CDY38285 | Canola | golgi | 90.72 | 90.49 |
| CDY25922 | Canola | golgi | 90.46 | 90.23 |
| Bra002743.1-P | Field mustard | golgi | 90.21 | 89.97 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 77.06 | 76.86 |
| AT4G30060.1 | Thale cress | golgi | 63.4 | 61.35 |
| KRH19073 | Soybean | golgi | 61.86 | 61.07 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 61.86 | 60.91 |
| HORVU2Hr1G100480.3 | Barley | cytosol | 50.77 | 60.62 |
| VIT_11s0103g00490.t01 | Wine grape | golgi, plastid | 60.82 | 58.56 |
| Solyc07g008940.2.1 | Tomato | golgi | 59.28 | 58.52 |
| PGSC0003DMT400073984 | Potato | golgi | 58.76 | 58.02 |
| Zm00001d026261_P001 | Maize | golgi, mitochondrion | 56.19 | 56.92 |
| KRH02808 | Soybean | golgi | 61.6 | 56.9 |
| EES12818 | Sorghum | golgi | 55.67 | 55.81 |
| TraesCS2D01G428700.2 | Wheat | mitochondrion | 54.64 | 55.79 |
| Zm00001d024348_P002 | Maize | mitochondrion | 53.09 | 55.68 |
| AT4G31350.4 | Thale cress | golgi | 53.61 | 55.32 |
| Zm00001d002382_P002 | Maize | golgi, mitochondrion | 55.15 | 55.3 |
| TraesCS2B01G452200.4 | Wheat | mitochondrion | 53.87 | 55.0 |
| KXG24737 | Sorghum | golgi | 54.12 | 54.83 |
| TraesCS2A01G430900.2 | Wheat | mitochondrion | 54.12 | 54.4 |
| Os08t0225400-01 | Rice | cytosol, golgi | 53.61 | 50.36 |
| AT5G11730.1 | Thale cress | golgi | 35.57 | 35.75 |
| AT5G25970.2 | Thale cress | golgi | 35.31 | 35.4 |
| AT3G21310.1 | Thale cress | golgi | 34.28 | 34.73 |
| AT1G51770.1 | Thale cress | golgi | 34.54 | 33.0 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 35.31 | 32.78 |
| AT1G10880.1 | Thale cress | golgi | 32.22 | 32.38 |
| AT5G14550.1 | Thale cress | mitochondrion | 31.44 | 32.36 |
| AT1G10280.1 | Thale cress | golgi | 33.25 | 31.31 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 31.44 | 31.12 |
| AT1G68390.1 | Thale cress | plastid | 32.47 | 30.88 |
| AT5G16170.1 | Thale cress | golgi | 32.22 | 30.41 |
| AT1G11940.1 | Thale cress | golgi | 28.61 | 28.98 |
| AT1G62305.1 | Thale cress | golgi | 27.84 | 28.57 |
Protein Annotations
| MapMan:35.1 | EntrezGene:835832 | UniProt:A0A178UFS8 | ProteinID:AED96873.1 | ProteinID:AED96874.1 | ProteinID:AED96875.1 |
| ProteinID:ANM69802.1 | ProteinID:ANM69803.1 | ArrayExpress:AT5G57270 | EnsemblPlantsGene:AT5G57270 | RefSeq:AT5G57270 | TAIR:AT5G57270 |
| RefSeq:AT5G57270-TAIR-G | EnsemblPlants:AT5G57270.5 | EMBL:AY062652 | EMBL:BT008483 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 |
| InterPro:Glyco_trans_14 | EMBL:KJ138636 | RefSeq:NP_001331455.1 | RefSeq:NP_001331456.1 | RefSeq:NP_200537.2 | RefSeq:NP_974949.1 |
| RefSeq:NP_974950.1 | ProteinID:OAO92766.1 | PFAM:PF02485 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF1 | UniProt:Q8W4D1 |
| TMHMM:TMhelix | UniParc:UPI000009E267 | : | : | : | : |
Description
At5g57270 [Source:UniProtKB/TrEMBL;Acc:Q8W4D1]
Coordinates
chr5:-:23200604..23203908
Molecular Weight (calculated)
44973.4 Da
IEP (calculated)
9.587
GRAVY (calculated)
-0.294
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MGENLHLSPR HRSSLKKPLL IVLLVCITSV LLVITYMYPQ HNNSKSSACA GLSSRGCQAA LSGWLPVHVR KFTDEEVAAR VVIKDILRLP PALTAKSKIA
101: FMFLTPGTLP FEKLWDKFFQ GQEGRFSIYI HPSRLRPVHI SRHFSDREIH SDHVTWGRIS MVDAERRLLA NALEDPDNQH FVLLSESCIP LHTFDYTYRY
201: LMHANVSFID SFEDLGPHGT GRHMDHMLPE IPRQDFRKGA QWFTMKRQHA VIVMADGLYY SKFREYCRPG VEANKNCIAD EHYLPTFFHM LDPGGISNWS
301: VTYVDWSERR WHPKTYRARD VSLKLLKNIT SDDMSVHVTS VGKRGEELRW PCTWKGIRRP CYLFARKLHS DALYKLVRLF PNYTSTVV
101: FMFLTPGTLP FEKLWDKFFQ GQEGRFSIYI HPSRLRPVHI SRHFSDREIH SDHVTWGRIS MVDAERRLLA NALEDPDNQH FVLLSESCIP LHTFDYTYRY
201: LMHANVSFID SFEDLGPHGT GRHMDHMLPE IPRQDFRKGA QWFTMKRQHA VIVMADGLYY SKFREYCRPG VEANKNCIAD EHYLPTFFHM LDPGGISNWS
301: VTYVDWSERR WHPKTYRARD VSLKLLKNIT SDDMSVHVTS VGKRGEELRW PCTWKGIRRP CYLFARKLHS DALYKLVRLF PNYTSTVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.