Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97141 | Canola | golgi | 88.6 | 88.6 |
| CDX97139 | Canola | golgi | 88.34 | 88.34 |
| CDX69735 | Canola | golgi | 88.08 | 88.08 |
| Bra008941.1-P | Field mustard | golgi | 87.82 | 87.82 |
| Bra006113.1-P | Field mustard | golgi | 85.75 | 85.75 |
| CDX78440 | Canola | cytosol | 71.5 | 85.45 |
| Bra006114.1-P | Field mustard | golgi | 77.98 | 84.08 |
| CDX78439 | Canola | golgi | 85.23 | 82.04 |
| CDX70417 | Canola | cytosol | 63.73 | 82.0 |
| CDX97140 | Canola | golgi | 86.27 | 81.22 |
| CDX70416 | Canola | golgi | 85.49 | 75.51 |
| AT5G25970.2 | Thale cress | golgi | 75.65 | 75.45 |
| EER93518 | Sorghum | golgi, plasma membrane, plastid | 61.92 | 61.92 |
| GSMUA_Achr1P14240_001 | Banana | golgi | 56.48 | 60.89 |
| GSMUA_Achr3P25730_001 | Banana | golgi | 55.7 | 59.89 |
| AT3G21310.1 | Thale cress | golgi | 59.07 | 59.53 |
| TraesCS4D01G061000.1 | Wheat | golgi, plasma membrane, plastid | 59.84 | 58.93 |
| Zm00001d033892_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 55.7 | 58.9 |
| TraesCS4A01G253400.1 | Wheat | golgi, plasma membrane, plastid | 59.59 | 58.82 |
| TraesCS4B01G062000.1 | Wheat | golgi, plasma membrane, plastid | 59.59 | 58.67 |
| HORVU4Hr1G010270.2 | Barley | golgi, peroxisome | 60.36 | 58.25 |
| EER93517 | Sorghum | golgi, mitochondrion, plasma membrane | 59.84 | 57.46 |
| EER93516 | Sorghum | golgi | 55.96 | 56.84 |
| Zm00001d033891_P001 | Maize | cytosol, golgi, plasma membrane | 58.29 | 55.83 |
| Zm00001d033890_P001 | Maize | golgi | 60.88 | 55.82 |
| AT1G51770.1 | Thale cress | golgi | 58.29 | 55.42 |
| Os03t0731050-00 | Rice | plastid | 59.33 | 53.5 |
| AT1G10880.1 | Thale cress | golgi | 45.85 | 45.85 |
| AT1G68390.1 | Thale cress | plastid | 47.67 | 45.1 |
| AT1G10280.1 | Thale cress | golgi | 47.15 | 44.17 |
| AT5G16170.1 | Thale cress | golgi | 46.63 | 43.8 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 45.08 | 41.63 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 41.19 | 40.56 |
| AT4G31350.4 | Thale cress | golgi | 35.75 | 36.7 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 36.53 | 36.25 |
| AT5G57270.5 | Thale cress | golgi | 35.75 | 35.57 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 35.49 | 34.77 |
| AT4G30060.1 | Thale cress | golgi | 35.75 | 34.41 |
| AT5G14550.1 | Thale cress | mitochondrion | 31.35 | 32.1 |
| AT1G62305.1 | Thale cress | golgi | 29.53 | 30.16 |
| AT1G11940.1 | Thale cress | golgi | 29.53 | 29.77 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831045 | UniProt:A0A178UFW2 | ProteinID:AED91715.1 | EMBL:AK227091 | ArrayExpress:AT5G11730 |
| EnsemblPlantsGene:AT5G11730 | RefSeq:AT5G11730 | TAIR:AT5G11730 | RefSeq:AT5G11730-TAIR-G | EnsemblPlants:AT5G11730.1 | TAIR:AT5G11730.1 |
| EMBL:AY093184 | Unigene:At.32216 | EMBL:BT008853 | ProteinID:CAB87691.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 |
| GO:GO:0005802 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 |
| InterPro:Glyco_trans_14 | EMBL:KJ138696 | RefSeq:NP_196734.1 | ProteinID:OAO91541.1 | PFAM:PF02485 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR31042 | PANTHER:PTHR31042:SF54 | UniProt:Q9LYF7 | TMHMM:TMhelix | UniParc:UPI000009E0D4 | SEG:seg |
Description
At5g11730 [Source:UniProtKB/TrEMBL;Acc:Q9LYF7]
Coordinates
chr5:+:3780302..3782793
Molecular Weight (calculated)
44270.5 Da
IEP (calculated)
9.819
GRAVY (calculated)
-0.198
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNRIVQLEE GKENGITVRS GHYKGFPSKL LLLLGLFLTF SVTVFIISVS TIKYTGIQSV VTTVTSSFVP CREGEPNSLS KWIQPPAVLM HNMSDEELLW
101: RASFWPRRKE YPFKRVPKVA FMFLTKGPLP LASLWERFLK GHKGLYSVYL HPHPSFTAKF PASSVFHRRQ IPSQVAEWGR MSMCDAEKRL LANALLDVSN
201: EWFVLVSESC IPLYNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNGNME PEVPLTKWRK GSQWFEVNRD LAATIVKDTL YYPKFKEFCR PACYVDEHYF
301: PTMLTIEKPT VLANRSLTWV DWSRGGPHPA TFGRSDITEN FFGKIFDGRN CSYNGRNTSM CYLFARKFAP SALEPLLHIA PKILGF
101: RASFWPRRKE YPFKRVPKVA FMFLTKGPLP LASLWERFLK GHKGLYSVYL HPHPSFTAKF PASSVFHRRQ IPSQVAEWGR MSMCDAEKRL LANALLDVSN
201: EWFVLVSESC IPLYNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNGNME PEVPLTKWRK GSQWFEVNRD LAATIVKDTL YYPKFKEFCR PACYVDEHYF
301: PTMLTIEKPT VLANRSLTWV DWSRGGPHPA TFGRSDITEN FFGKIFDGRN CSYNGRNTSM CYLFARKFAP SALEPLLHIA PKILGF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.