CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
plastid 2
golgi 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033892_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	92.63	96.44
EER93518	Sorghum	golgi, plasma membrane, plastid	82.11	80.83
TraesCS4B01G062000.1	Wheat	golgi, plasma membrane, plastid	80.0	77.55
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	79.74	77.3
TraesCS4A01G253400.1	Wheat	golgi, plasma membrane, plastid	79.47	77.24
HORVU4Hr1G010270.2	Barley	golgi, peroxisome	78.95	75.0
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	73.42	69.4
PGSC0003DMT400035937	Potato	mitochondrion	52.63	68.03
VIT_09s0002g02660.t01	Wine grape	cytosol	52.37	67.69
KRH48972	Soybean	cytosol	36.58	65.26
Os03t0731050-00	Rice	plastid	72.89	64.72
KRH13326	Soybean	cytosol	36.05	64.32
GSMUA_Achr1P14240_001	Banana	golgi	59.47	63.13
CDX80552	Canola	cytosol	24.74	61.44
GSMUA_Achr3P25730_001	Banana	golgi	57.37	60.72
KRH47176	Soybean	cytosol, golgi, plasma membrane	59.21	58.14
AT3G21310.1	Thale cress	golgi	58.16	57.7
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	58.42	57.66
CDX78440	Canola	cytosol	48.95	57.59
KRH44223	Soybean	cytosol, golgi, plasma membrane	58.16	57.11
Solyc08g065860.2.1	Tomato	golgi	56.84	56.69
CDX97139	Canola	golgi	57.11	56.22
Bra008941.1-P	Field mustard	golgi	57.11	56.22
CDX97141	Canola	golgi	57.11	56.22
CDY51451	Canola	golgi	56.32	56.17
Bra031273.1-P	Field mustard	golgi	56.32	56.17
AT5G11730.1	Thale cress	golgi	56.84	55.96
CDX69735	Canola	golgi	56.84	55.96
KRH05512	Soybean	nucleus	55.79	55.64
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	55.53	55.38
KRH15500	Soybean	nucleus	55.0	55.0
PGSC0003DMT400012489	Potato	golgi	53.95	54.96
CDX87842	Canola	golgi	56.05	54.76
Bra030418.1-P	Field mustard	golgi	56.05	54.76
CDY43927	Canola	golgi	56.05	54.76
Bra006113.1-P	Field mustard	golgi	55.26	54.4
CDX70417	Canola	cytosol	42.89	54.33
AT5G25970.2	Thale cress	golgi	55.26	54.26
Bra006114.1-P	Field mustard	golgi	51.05	54.19
Solyc06g062490.2.1	Tomato	golgi	52.63	54.05
Solyc03g121280.2.1	Tomato	golgi, nucleus, plasma membrane	54.74	54.03
Bra009874.1-P	Field mustard	golgi	54.47	53.63
CDX88209	Canola	golgi	49.21	53.43
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	54.21	53.37
CDX78439	Canola	golgi	55.26	52.37
CDX97140	Canola	golgi	56.05	51.95
AT1G51770.1	Thale cress	golgi	55.26	51.72
KXG24124	Sorghum	cytosol, golgi, plasma membrane, plastid	52.63	49.14
CDX70416	Canola	golgi	55.0	47.83
EES14395	Sorghum	endoplasmic reticulum, golgi, plastid	46.58	42.96
EES03971	Sorghum	golgi	44.47	42.78
EES02542	Sorghum	golgi	42.63	39.9
EES11719	Sorghum	golgi, mitochondrion, peroxisome	46.32	39.46
EES02543	Sorghum	golgi	40.79	39.04
KXG31955	Sorghum	golgi	41.58	37.62
KXG20769	Sorghum	golgi	36.32	37.1
KXG24737	Sorghum	golgi	36.58	36.29
OQU75988	Sorghum	golgi, mitochondrion, plastid, vacuole	25.0	35.85
EES12818	Sorghum	golgi	36.32	35.66
KXG20537	Sorghum	mitochondrion	34.21	34.39
OQU84731	Sorghum	plastid	43.42	34.38
EES04616	Sorghum	golgi	34.47	33.94
EES19116	Sorghum	golgi	31.32	31.23
KXG33181	Sorghum	golgi, mitochondrion, plastid	30.26	29.41

Protein Annotations

EnsemblPlants:EER93516	EnsemblPlantsGene:SORBI_3001G103000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF54
PFAM:PF02485	ProteinID:EER93516	ProteinID:EER93516.1	RefSeq:XP_002466518.1	SEG:seg	TMHMM:TMhelix
unigene:Sbi.20929	UniParc:UPI0001A82767	UniProt:C5WLY8	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr1:-:7890142..7893303

Molecular Weight (calculated)

43249.7 Da

IEP (calculated)

7.151

GRAVY (calculated)

-0.180

Length

380 amino acids

Sequence
(BLAST)

001: MENDVKEAKA RQGQQQHRVF PWGMLKVFLL LGLGLSAAGM LMARHGHEVA AATLFRPWLG VSPAADAAVA AAAAAAAAAE GLEHSMTDEE LLWRASFAPG
101: VRRYPFRRVP KVAFMFLTRG PLPLAPLWER FFRGNDGRYS IYVHALPSYR ANFTSESVFY RRQIPSKVAE WGQMTMCDAE RRLLANALLD ISNEWFVLVS
201: ESCIPIFDFN TTYQYFLNSS QSFVMAIDDP GPYGRGRYNW NMTPEVELDQ WRKGSQWFEV NRELAIEIVK DTVYYPKFKE FCRPSCYSDE HYIQTMLSIE
301: TPQSLANRSV TWVDWSRIAA HPARFGRGDI TEEFLREVRE GQTCLYNEQN STLCFLFARK FAPSALGPLL ELAPTVLGFG

Best Arabidopsis Sequence Match ( AT5G11730.1 )
(BLAST)

001: MQNRIVQLEE GKENGITVRS GHYKGFPSKL LLLLGLFLTF SVTVFIISVS TIKYTGIQSV VTTVTSSFVP CREGEPNSLS KWIQPPAVLM HNMSDEELLW
101: RASFWPRRKE YPFKRVPKVA FMFLTKGPLP LASLWERFLK GHKGLYSVYL HPHPSFTAKF PASSVFHRRQ IPSQVAEWGR MSMCDAEKRL LANALLDVSN
201: EWFVLVSESC IPLYNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNGNME PEVPLTKWRK GSQWFEVNRD LAATIVKDTL YYPKFKEFCR PACYVDEHYF
301: PTMLTIEKPT VLANRSLTWV DWSRGGPHPA TFGRSDITEN FFGKIFDGRN CSYNGRNTSM CYLFARKFAP SALEPLLHIA PKILGF

Arabidopsis Description

At5g11730 [Source:UniProtKB/TrEMBL;Acc:Q9LYF7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.