Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- golgi 5
- nucleus 1
- extracellular 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g062490.2.1 | Tomato | golgi | 93.57 | 94.32 |
| PGSC0003DMT400006434 | Potato | golgi, nucleus, plasma membrane | 73.46 | 70.98 |
| VIT_09s0002g02660.t01 | Wine grape | cytosol | 55.76 | 70.75 |
| PGSC0003DMT400035937 | Potato | mitochondrion | 54.16 | 68.71 |
| KRH47176 | Soybean | cytosol, golgi, plasma membrane | 64.08 | 61.76 |
| KRH48972 | Soybean | cytosol | 35.12 | 61.5 |
| KRH44223 | Soybean | cytosol, golgi, plasma membrane | 63.0 | 60.72 |
| KRH13326 | Soybean | cytosol | 34.58 | 60.56 |
| AT3G21310.1 | Thale cress | golgi | 59.79 | 58.22 |
| GSMUA_Achr1P14240_001 | Banana | golgi | 54.42 | 56.7 |
| GSMUA_Achr3P25730_001 | Banana | golgi | 54.42 | 56.55 |
| EER93518 | Sorghum | golgi, plasma membrane, plastid | 58.18 | 56.22 |
| Zm00001d033892_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 54.16 | 55.34 |
| Bra030418.1-P | Field mustard | golgi | 57.64 | 55.27 |
| CDY43927 | Canola | golgi | 57.64 | 55.27 |
| CDX87842 | Canola | golgi | 57.64 | 55.27 |
| CDY51451 | Canola | golgi | 56.3 | 55.12 |
| Bra031273.1-P | Field mustard | golgi | 56.3 | 55.12 |
| TraesCS4A01G253400.1 | Wheat | golgi, plasma membrane, plastid | 57.64 | 54.99 |
| TraesCS4D01G061000.1 | Wheat | golgi, plasma membrane, plastid | 57.1 | 54.34 |
| TraesCS4B01G062000.1 | Wheat | golgi, plasma membrane, plastid | 56.84 | 54.08 |
| EER93516 | Sorghum | golgi | 54.96 | 53.95 |
| PGSC0003DMT400014396 | Potato | cytosol | 42.63 | 53.72 |
| CDY56916 | Canola | cytosol, golgi, plasma membrane, plastid | 54.69 | 53.54 |
| AT1G51770.1 | Thale cress | golgi | 57.91 | 53.2 |
| HORVU4Hr1G010270.2 | Barley | golgi, peroxisome | 56.84 | 53.0 |
| Zm00001d033890_P001 | Maize | golgi | 57.64 | 51.07 |
| PGSC0003DMT400037735 | Potato | cytosol | 28.15 | 50.97 |
| EER93517 | Sorghum | golgi, mitochondrion, plasma membrane | 54.16 | 50.25 |
| Zm00001d033891_P001 | Maize | cytosol, golgi, plasma membrane | 54.16 | 50.12 |
| Os03t0731050-00 | Rice | plastid | 55.23 | 48.13 |
| PGSC0003DMT400063986 | Potato | golgi | 48.79 | 45.84 |
| PGSC0003DMT400037733 | Potato | golgi | 46.65 | 45.19 |
| PGSC0003DMT400013770 | Potato | golgi | 48.79 | 44.17 |
| PGSC0003DMT400055283 | Potato | golgi | 33.51 | 33.6 |
| PGSC0003DMT400073984 | Potato | golgi | 35.39 | 33.59 |
| PGSC0003DMT400042390 | Potato | golgi | 32.98 | 32.8 |
| PGSC0003DMT400001379 | Potato | mitochondrion | 31.64 | 28.16 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012489 | EnsemblPlantsGene:PGSC0003DMG400004876 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | InterPro:Glyco_trans_14 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF54 |
| PFAM:PF02485 | PGSC:PGSC0003DMG400004876 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002960BBF | UniProt:M1A1A9 |
| MapMan:35.1 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004876]
Coordinates
chr6:+:48907597..48909901
Molecular Weight (calculated)
43277.4 Da
IEP (calculated)
9.465
GRAVY (calculated)
-0.130
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILEHGKDN KPLSLKVLQF LLLFLGLGIA LSILSMCMLR FAELKNVLPV VQSRINPCFQ QQNSLENWIR PLSNLHHSMN DAELFWRASF VPQMKILPFK
101: RTPKIAFLFL TRGSLPLAPL WERFFKGNEE LYSIYIHNLP SYKPDFPTSS VFYGRQIPSQ VAEWGDISIT DAERRLLANA LLDISNEWFI ILSESCIPLH
201: NFSVIYRYIS ESRYSFVSVF DDPRSVGRGR YNWKMSPVVK ITQWRKGSQW FEVNRKLAVD IVTDEVYYPK FKQFCKPSCY VDEHYFPTML HIQSPHLLTN
301: TSLTWVDWHR GGAHPATFGK ADVTDKFLKQ LSEGQRTCVY NNQTTSYCLL FARKFSPSAL DPLLKLSSKY LGF
101: RTPKIAFLFL TRGSLPLAPL WERFFKGNEE LYSIYIHNLP SYKPDFPTSS VFYGRQIPSQ VAEWGDISIT DAERRLLANA LLDISNEWFI ILSESCIPLH
201: NFSVIYRYIS ESRYSFVSVF DDPRSVGRGR YNWKMSPVVK ITQWRKGSQW FEVNRKLAVD IVTDEVYYPK FKQFCKPSCY VDEHYFPTML HIQSPHLLTN
301: TSLTWVDWHR GGAHPATFGK ADVTDKFLKQ LSEGQRTCVY NNQTTSYCLL FARKFSPSAL DPLLKLSSKY LGF
001: MGMEEGIKDN AASAPNSRPT NQLKALLPMR VLQVFLLFFV LVLGISVISM HMIKYLKIQT LAPSTLISTY DERITLESLI KPPLNGWHSM NDSELLWRAS
101: MEPRILDYPF KRVPKMAFMF LTKGPLPFAP LWERFFKGHE GFYSIYVHTL PNYRSDFPSS SVFYRRQIPS QHVAWGEMSM CDAERRLLAN ALLDISNEWF
201: VLLSEACIPL RGFNFVYRYV SRSRYSFMGS VDEDGPYGRG RYSYAMGPEV SLNEWRKGSQ WFEINRALAV DIVEDMVYYN KFKEFCRPPC YVDEHYFPTM
301: LSIGYPDFLA NRTLTWTDWS RGGAHPATFG KADITEKFIK KLSRGKACFY NDQPSQVCYL FARKFAPSAL KPLLKLAPKV LGF
101: MEPRILDYPF KRVPKMAFMF LTKGPLPFAP LWERFFKGHE GFYSIYVHTL PNYRSDFPSS SVFYRRQIPS QHVAWGEMSM CDAERRLLAN ALLDISNEWF
201: VLLSEACIPL RGFNFVYRYV SRSRYSFMGS VDEDGPYGRG RYSYAMGPEV SLNEWRKGSQ WFEINRALAV DIVEDMVYYN KFKEFCRPPC YVDEHYFPTM
301: LSIGYPDFLA NRTLTWTDWS RGGAHPATFG KADITEKFIK KLSRGKACFY NDQPSQVCYL FARKFAPSAL KPLLKLAPKV LGF
Arabidopsis Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:TAIR;Acc:AT3G21310]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.