Factsheet for PGSC0003DMT400037735

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G085260.1	Barley	cytosol	57.28	49.17
PGSC0003DMT400037733	Potato	golgi	86.89	46.49
Solyc05g009110.1.1	Tomato	golgi	86.41	46.23
TraesCS1D01G394500.1	Wheat	mitochondrion	59.71	42.12
PGSC0003DMT400014396	Potato	cytosol	57.77	40.2
GSMUA_Achr6P09800_001	Banana	cytosol	53.88	39.93
KRH60391	Soybean	golgi, plastid	69.9	38.3
KRH41690	Soybean	golgi	68.45	37.9
PGSC0003DMT400035937	Potato	mitochondrion	52.91	37.07
CDX73016	Canola	mitochondrion	59.22	35.16
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	59.22	34.86
KRH48513	Soybean	golgi	72.33	33.33
KRH39163	Soybean	golgi	72.33	33.04
PGSC0003DMT400013770	Potato	golgi	61.16	30.58
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	59.71	29.43
PGSC0003DMT400063986	Potato	golgi	56.31	29.22
PGSC0003DMT400012489	Potato	golgi	50.97	28.15
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	50.97	27.2
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	58.25	26.91
Os02t0327500-01	Rice	golgi	56.31	26.42
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	58.74	26.08
Zm00001d053393_P002	Maize	golgi, plastid	56.8	26.06
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	59.22	25.96
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	57.28	25.27
OQU84731	Sorghum	plastid	57.77	24.79
PGSC0003DMT400073984	Potato	golgi	45.63	23.92
PGSC0003DMT400055283	Potato	golgi	40.29	22.31
PGSC0003DMT400042390	Potato	golgi	39.81	21.87
PGSC0003DMT400001379	Potato	mitochondrion	38.35	18.85
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400037735	EnsemblPlantsGene:PGSC0003DMG400014556	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7	PFAM:PF02485
PGSC:PGSC0003DMG400014556	UniParc:UPI000295F075	UniProt:M1B5T5	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014556]

Coordinates

chr5:+:3149039..3149659

Molecular Weight (calculated)

24111.0 Da

IEP (calculated)

9.937

GRAVY (calculated)

-0.522

Length

206 amino acids

Sequence
(BLAST)

001: MVEAEKRLLA NALLDSSNQR FVLLSEACIP LFNFSTIYTH LMNSNENFVE TYDQPGPLGR GRYRPQMSPM IKLSQWRKGS QWFEMDRDLA LEVVSDKTYF
101: SIFQKYCKGS CYADEHYLPT FVNMKFKNRN SGRTLTWVDW SKGGAHPARF NRQDITKEFL KKLRSESSCE YNGKKTSICH LFARKFTSHA LSRLLMFAPK
201: VMQFNH

Best Arabidopsis Sequence Match ( AT1G10880.1 )
(BLAST)

001: MKKQKITTFV KELNLRMNSK KEPISLRYIH ILGTVVFFSS VSSLVILLAF YLNQRLQTSL FLVEDYHTLS SNPLTSPSLS PPPSPSPRSS GSNIADEELM
101: WRAAMAPRSP MKNETHPKVA FMFLTRWNLP LSPLWEMFFK GHEGFYSIYV HTSPEFTQEP PESSVFYKKR IPSKAVEWGK CSMMDAEKRL ISHALLEPSN
201: ARFVLLSETC IPLFNFTTIY TYLTRSTRSF LGSFDDPRPM GRGRYTPKML PHVSLSDWRK GNQWFEISRR VAAEIVSDRR YYAVFKDHCR PPCYIDEHYL
301: PTLVNKICPE MNSNRTVTWV DWSRGGSHPA RFVRKDIRVG FLDRIRFGSN CSYEGEVTNV CFLFGRKFHV STLEPLMKIA PYLFGI

Arabidopsis Description

Core-2/I-branching beta-1,6-n-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WR07]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.