Factsheet for PGSC0003DMT400073984

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
mitochondrion 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008940.2.1	Tomato	golgi	98.22	98.22
KRH19073	Soybean	golgi	73.54	73.54
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	70.99	69.23
KRH02808	Soybean	golgi	73.54	68.81
HORVU2Hr1G100480.3	Barley	cytosol	53.18	64.31
CDX89388	Canola	cytosol	36.9	63.6
Bra010307.1-P	Field mustard	golgi, mitochondrion	64.89	63.59
Zm00001d026261_P001	Maize	golgi, mitochondrion	61.83	63.45
CDY03552	Canola	golgi, mitochondrion	64.63	63.34
EES12818	Sorghum	golgi	62.34	63.31
AT2G19160.1	Thale cress	golgi, mitochondrion	63.36	63.2
AT4G30060.1	Thale cress	golgi	64.12	62.84
KXG24737	Sorghum	golgi	60.56	62.14
CDY12850	Canola	mitochondrion	62.85	62.06
CDX83505	Canola	mitochondrion	62.85	62.06
Zm00001d002382_P002	Maize	golgi, mitochondrion	61.07	62.02
CDY01412	Canola	mitochondrion	62.85	61.9
Bra012167.1-P	Field mustard	mitochondrion	62.85	61.9
Zm00001d024348_P002	Maize	mitochondrion	58.02	61.62
Bra036729.1-P	Field mustard	mitochondrion	62.09	61.62
CDY03361	Canola	mitochondrion	61.83	61.52
CDY66853	Canola	mitochondrion	61.83	61.36
TraesCS2D01G428700.2	Wheat	mitochondrion	59.03	61.05
TraesCS2B01G452200.4	Wheat	mitochondrion	58.78	60.79
CDY30178	Canola	mitochondrion	61.58	60.2
CDY46724	Canola	mitochondrion	61.58	60.05
TraesCS2A01G430900.2	Wheat	mitochondrion	58.27	59.33
Bra013927.1-P	Field mustard	golgi, plastid	55.22	59.29
CDY51089	Canola	golgi, mitochondrion	59.54	59.24
Bra024111.1-P	Field mustard	mitochondrion	56.49	59.2
CDY49466	Canola	cytosol	38.68	59.14
CDX88613	Canola	golgi	58.27	58.87
CDY11878	Canola	golgi	58.27	58.87
Bra002743.1-P	Field mustard	golgi	58.27	58.87
AT5G57270.5	Thale cress	golgi	58.02	58.76
CDY38285	Canola	golgi	58.02	58.61
CDX94406	Canola	golgi	56.49	58.58
Bra038843.1-P	Field mustard	mitochondrion	59.29	58.54
CDY25922	Canola	golgi	57.76	58.35
AT4G25870.1	Thale cress	cytosol, golgi, mitochondrion, plastid	57.76	58.35
CDX82625	Canola	mitochondrion	58.52	58.23
CDX92736	Canola	mitochondrion	55.73	57.78
CDY42774	Canola	mitochondrion	55.47	57.52
Os08t0225400-01	Rice	cytosol, golgi	60.05	57.14
Bra019138.1-P	Field mustard	plastid	53.44	53.85
Bra010446.1-P	Field mustard	mitochondrion	53.18	53.73
CDY66012	Canola	mitochondrion	49.62	53.42
CDY57290	Canola	cytosol	43.26	49.13
CDY14193	Canola	mitochondrion	64.89	48.66
PGSC0003DMT400035937	Potato	mitochondrion	34.86	46.6
PGSC0003DMT400037735	Potato	cytosol	23.92	45.63
PGSC0003DMT400014396	Potato	cytosol	34.35	45.61
PGSC0003DMT400013770	Potato	golgi	37.66	35.92
PGSC0003DMT400012489	Potato	golgi	33.59	35.39
PGSC0003DMT400037733	Potato	golgi	34.61	35.32
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	34.61	35.23
PGSC0003DMT400063986	Potato	golgi	33.08	32.75
PGSC0003DMT400042390	Potato	golgi	30.28	31.73
PGSC0003DMT400055283	Potato	golgi	29.77	31.45
PGSC0003DMT400001379	Potato	mitochondrion	31.04	29.12

Protein Annotations

EntrezGene:102583916	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	UniProt:M1CSY6	PFAM:PF02485
EnsemblPlantsGene:PGSC0003DMG400028752	PGSC:PGSC0003DMG400028752	EnsemblPlants:PGSC0003DMT400073984	PANTHER:PTHR31042	PANTHER:PTHR31042:SF1	TMHMM:TMhelix
UniParc:UPI0002962CB0	RefSeq:XP_006361631.1	SEG:seg	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028752]

Coordinates

chr7:-:6661573..6668071

Molecular Weight (calculated)

45755.9 Da

IEP (calculated)

8.295

GRAVY (calculated)

-0.352

Length

393 amino acids

Sequence
(BLAST)

001: MKTSQGWRLG MKEMQILSAP RQRAQLKKPT WIIVLVSLVS LFLICAYVYP PQGSGACYVF SLNGCKGLSD WLPPAPAREL TDEELASHVV TNEILNTPPV
101: VPENPKIAFM FLIPGALPFE KLWDRFFQGH EGKFSVYVHA SKDKPVHFSR YFVNREIRSD KVVWGKISMV DAERRLLAYA LKETDNQHFV LLSDSCIPLR
201: DFDYVYNYLM YTNISFVDCF EDPGPHGSGR YSEHMLPEVE KKHFRKGAQW FTMKRQHALA VMADSLYYRK FKDYCRPNME GNRNCYSDEH YIPTFFYMLD
301: PTGISNWSVT HVDWSEGKWH PKSYVRKDIT YELMKNITSI SENVHVTSDA RKEVQINPCL WNGNQRPCYL FARKFLPEAL DSLLQLYPNY TSI

Best Arabidopsis Sequence Match ( AT2G19160.2 )
(BLAST)

001: MKAIKGWRLG KINYMQSLPG ARHRAPTRKP IWIIAVLSLI AMFVIGAYMF PHHSKAACYM FSSKGCKGLT DWLPPSLREY SDDEIAARVV ISEILSSPRV
101: IKKSSKIAFM FLTPGTLPFE KLWDLFFQGH EGKFSVYIHA SKDTPVHTSR YFLNREIRSD EVVWGRISMI DAERRLLTNA LRDPENQQFV LLSDSCVPLR
201: SFEYMYNYMM HSNVSYVDCF DDPGPHGTGR HMDHMLPEIP REDFRKGAQW FSMKRQHAVV TVADNLYYSK FRDYCGPGVE GNKNCIADEH YLPTFFYMLD
301: PTGIANWTVT YVDWSERKWH PRKYMPEDIT LELIKNISSI DAVSRVTSEK NGVVSWTHCM WNGIKRPCYL FGRKFHADTL DKLMELFPNY TSIV

Arabidopsis Description

At2g19160 [Source:UniProtKB/TrEMBL;Acc:Q8W460]
SUBAcon: [golgi,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.