Factsheet for PGSC0003DMT400063986

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
golgi 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103150.2.1	Tomato	golgi	97.48	97.48
GSMUA_Achr7P23520_001	Banana	cytosol	50.88	68.47
GSMUA_Achr8P29190_001	Banana	cytosol	44.84	65.2
VIT_12s0035g01710.t01	Wine grape	golgi	61.46	64.38
CDY31036	Canola	golgi	59.45	62.6
KRH26270	Soybean	golgi	59.7	61.88
CDX93443	Canola	golgi	59.7	61.72
CDX94911	Canola	golgi	59.7	61.56
KRH06031	Soybean	golgi, plasma membrane, plastid	60.45	60.91
CDY20644	Canola	golgi	59.45	60.51
Bra018450.1-P	Field mustard	golgi	60.2	59.16
GSMUA_Achr8P08460_001	Banana	golgi	53.9	58.95
PGSC0003DMT400035937	Potato	mitochondrion	43.58	58.84
AT1G10280.1	Thale cress	golgi	60.71	58.5
GSMUA_Achr5P01370_001	Banana	golgi	53.9	58.47
Bra019951.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	60.71	58.21
PGSC0003DMT400037735	Potato	cytosol	29.22	56.31
TraesCS7D01G317600.1	Wheat	cytosol, golgi, peroxisome	57.43	56.3
TraesCS7A01G320800.1	Wheat	cytosol, golgi, peroxisome	57.18	56.05
TraesCS7B01G221700.1	Wheat	cytosol, golgi, peroxisome	56.93	55.8
Os08t0110400-01	Rice	cytosol, golgi, peroxisome	57.18	55.77
HORVU7Hr1G076790.5	Barley	golgi	57.18	55.5
PGSC0003DMT400014396	Potato	cytosol	41.06	55.07
EES14395	Sorghum	endoplasmic reticulum, golgi, plastid	56.68	54.61
Zm00001d035039_P001	Maize	plasma membrane	56.68	54.35
GSMUA_Achr8P32350_001	Banana	golgi, mitochondrion	54.16	54.02
Os04t0272400-01	Rice	golgi, nucleus, peroxisome	54.66	52.67
TraesCS2D01G566600.1	Wheat	cytosol, golgi, plasma membrane	53.9	51.44
TraesCS2B01G616400.1	Wheat	golgi	53.9	51.2
HORVU2Hr1G127680.1	Barley	cytosol, golgi, plasma membrane	52.9	50.36
TraesCSU01G137600.1	Wheat	cytosol, golgi, plasma membrane	53.65	49.88
PGSC0003DMT400012489	Potato	golgi	45.84	48.79
Zm00001d026711_P001	Maize	cytosol, golgi, plasma membrane	52.64	47.83
EES11719	Sorghum	golgi, mitochondrion, peroxisome	52.9	47.09
PGSC0003DMT400037733	Potato	golgi	45.09	46.49
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	45.09	46.37
PGSC0003DMT400013770	Potato	golgi	43.07	41.5
PGSC0003DMT400055283	Potato	golgi	31.23	33.33
PGSC0003DMT400073984	Potato	golgi	32.75	33.08
PGSC0003DMT400042390	Potato	golgi	30.23	32.0
PGSC0003DMT400001379	Potato	mitochondrion	29.72	28.16

Protein Annotations

EnsemblPlants:PGSC0003DMT400063986	EnsemblPlantsGene:PGSC0003DMG400024872	EntrezGene:102579219	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF3	PFAM:PF02485	PGSC:PGSC0003DMG400024872	RefSeq:XP_006349290.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00029611F5	UniProt:M1CBJ4	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024872]

Coordinates

chr1:+:79913096..79917796

Molecular Weight (calculated)

45722.9 Da

IEP (calculated)

8.658

GRAVY (calculated)

-0.191

Length

397 amino acids

Sequence
(BLAST)

001: MRNRGEKEDL EGKLPVSVTR DSSVSLLRVL STLIVFVIGV VIGLTSSSHI DRYFTFQAEQ IIANNALADT VSKESGNCSV CEKEDCLSMD SFVRPKILIH
101: GMSDEELFWR ASLEPYKKEF PFKRVPKVAF MFLTRGQLPF IPLWERFFQG QDVNKYSIYM HALPGYVLSI SNTSVFYKRQ IPSQHVEWGS VTLVDAEKRL
201: MANALLDFSN ERFVLLSESC IPVYNFPTVY KYLIGSIHSF VESYDDPSRY GRGRYNRHMK PDIKLPDWRK GSQWFEMNRT LAVRVVSDTK YYDIFRRFCK
301: PACYPDEHYI PTFIRLFHGP LNANRTVTYV DWSLGGPHPA AFSAVNITEG FLQLIRNNGT ACAYNSEKTH VCYLFARKFN PSALEPLLNL SSKVMEF

Best Arabidopsis Sequence Match ( AT1G10280.1 )
(BLAST)

001: MARGGKEEGE KHIGLLKLAQ TLSFLLIFMA GIIIGLAASS HIDRYFNSLP RMFSSTTNLQ SIPFSTPDYS NCTIIHRDCT GNDDNESDDG GVKAEKPKVR
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF

Arabidopsis Description

At1g10280 [Source:UniProtKB/TrEMBL;Acc:Q9SY70]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.