Factsheet for GSMUA_Achr8P08460_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
golgi 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P23520_001	Banana	cytosol	62.53	76.95
GSMUA_Achr5P01370_001	Banana	golgi	73.0	72.4
GSMUA_Achr8P29190_001	Banana	cytosol	51.79	68.86
GSMUA_Achr8P32350_001	Banana	golgi, mitochondrion	72.45	66.08
VIT_12s0035g01710.t01	Wine grape	golgi	60.33	57.78
GSMUA_Achr6P09800_001	Banana	cytosol	42.98	56.12
GSMUA_Achr8P31730_001	Banana	cytosol	41.87	55.47
CDY31036	Canola	golgi	57.02	54.91
KRH26270	Soybean	golgi	57.58	54.57
CDX93443	Canola	golgi	57.58	54.43
KRH06031	Soybean	golgi, plasma membrane, plastid	58.68	54.06
PGSC0003DMT400063986	Potato	golgi	58.95	53.9
CDX94911	Canola	golgi	56.75	53.51
CDY20644	Canola	golgi	57.3	53.33
Solyc01g103150.2.1	Tomato	golgi	57.58	52.64
Bra018450.1-P	Field mustard	golgi	57.58	51.73
AT1G10280.1	Thale cress	golgi	57.85	50.97
Bra019951.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	58.13	50.97
GSMUA_Achr1P14240_001	Banana	golgi	49.59	50.28
GSMUA_Achr1P04590_001	Banana	cytosol	40.77	48.84
GSMUA_Achr1P04580_001	Banana	cytosol	39.39	48.31
GSMUA_Achr3P25730_001	Banana	golgi	42.98	43.45
GSMUA_Achr10P...	Banana	cytosol	31.13	40.21
GSMUA_Achr7P08690_001	Banana	endoplasmic reticulum, golgi	32.78	40.2
GSMUA_Achr11P...	Banana	cytosol	31.68	39.52
GSMUA_Achr5P24160_001	Banana	mitochondrion	34.99	36.18
GSMUA_Achr4P12520_001	Banana	golgi	36.91	34.27
GSMUA_Achr4P05750_001	Banana	golgi	36.64	34.02
GSMUA_Achr9P21910_001	Banana	golgi	30.58	28.76
GSMUA_Achr2P14170_001	Banana	mitochondrion	27.82	27.52
GSMUA_Achr3P28930_001	Banana	golgi	28.65	27.15

Protein Annotations

EnsemblPlants:GSMUA_Achr8P08460_001	EnsemblPlants:GSMUA_Achr8T08460_001	EnsemblPlantsGene:GSMUA_Achr8G08460_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF3	PFAM:PF02485	TMHMM:TMhelix	UniParc:UPI0002959EDD	UniProt:M0TNP9	MapMan:35.1

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G08460_001]

Coordinates

chr8:+:5657860..5659298

Molecular Weight (calculated)

42451.0 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.160

Length

363 amino acids

Sequence
(BLAST)

001: MWKTRGKTDE EEVDYFHSTP IKRWSIGLVK FVSFLVTLMA GVVLGLSLST NFSRYYNLQT ELFFPRTMYM ANCDKDCLSM KSFLGPTHLM HGMTDEELFW
101: RASLVPKMEE YPFERVPKVA FLFLTRGPLP FKPLWERFFM GHKGLYSIYI HSIPDYKLNV TEDSVFYSRQ IPSEEVFWGS ITLVDAEKRL LANALLDFSN
201: ERFVLLSESC VPVYNFPSVY EYLINSAHSF VESYDEDSPQ GRGRYSQNMA PEIQEYQWMK GSEWFELNRE LAVNIVADYK YYSIFRKYCK PSCYPDEHYI
301: PTYLNMFHGA LNANRSVTWA IRNNATFCMY NSRPTPICFL FARKFAPSAL VPLLDMASTV MGF

Best Arabidopsis Sequence Match ( AT1G10280.1 )
(BLAST)

001: MARGGKEEGE KHIGLLKLAQ TLSFLLIFMA GIIIGLAASS HIDRYFNSLP RMFSSTTNLQ SIPFSTPDYS NCTIIHRDCT GNDDNESDDG GVKAEKPKVR
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF

Arabidopsis Description

At1g10280 [Source:UniProtKB/TrEMBL;Acc:Q9SY70]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.