Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93443 | Canola | golgi | 84.47 | 90.62 |
| CDY20644 | Canola | golgi | 85.68 | 90.51 |
| CDY31036 | Canola | golgi | 82.52 | 90.19 |
| CDX94911 | Canola | golgi | 83.5 | 89.35 |
| Bra018450.1-P | Field mustard | golgi | 86.17 | 87.87 |
| Bra019951.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 87.38 | 86.96 |
| GSMUA_Achr7P23520_001 | Banana | cytosol | 51.21 | 71.53 |
| VIT_12s0035g01710.t01 | Wine grape | golgi | 59.71 | 64.91 |
| GSMUA_Achr8P29190_001 | Banana | cytosol | 42.48 | 64.1 |
| KRH26270 | Soybean | golgi | 58.5 | 62.92 |
| KRH06031 | Soybean | golgi, plasma membrane, plastid | 59.95 | 62.69 |
| PGSC0003DMT400063986 | Potato | golgi | 58.5 | 60.71 |
| Solyc01g103150.2.1 | Tomato | golgi | 57.77 | 59.95 |
| GSMUA_Achr5P01370_001 | Banana | golgi | 52.18 | 58.74 |
| GSMUA_Achr8P08460_001 | Banana | golgi | 50.97 | 57.85 |
| TraesCS7D01G317600.1 | Wheat | cytosol, golgi, peroxisome | 54.61 | 55.56 |
| TraesCS7A01G320800.1 | Wheat | cytosol, golgi, peroxisome | 54.37 | 55.31 |
| TraesCS7B01G221700.1 | Wheat | cytosol, golgi, peroxisome | 54.37 | 55.31 |
| Os08t0110400-01 | Rice | cytosol, golgi, peroxisome | 54.61 | 55.28 |
| GSMUA_Achr8P32350_001 | Banana | golgi, mitochondrion | 53.4 | 55.28 |
| EES14395 | Sorghum | endoplasmic reticulum, golgi, plastid | 54.61 | 54.61 |
| HORVU7Hr1G076790.5 | Barley | golgi | 53.88 | 54.28 |
| Zm00001d035039_P001 | Maize | plasma membrane | 54.13 | 53.86 |
| Os04t0272400-01 | Rice | golgi, nucleus, peroxisome | 51.94 | 51.94 |
| TraesCS2D01G566600.1 | Wheat | cytosol, golgi, plasma membrane | 51.46 | 50.96 |
| TraesCS2B01G616400.1 | Wheat | golgi | 51.46 | 50.72 |
| HORVU2Hr1G127680.1 | Barley | cytosol, golgi, plasma membrane | 50.24 | 49.64 |
| TraesCSU01G137600.1 | Wheat | cytosol, golgi, plasma membrane | 51.21 | 49.41 |
| AT3G21310.1 | Thale cress | golgi | 44.66 | 48.04 |
| AT5G11730.1 | Thale cress | golgi | 44.17 | 47.15 |
| Zm00001d026711_P001 | Maize | cytosol, golgi, plasma membrane | 49.76 | 46.91 |
| EES11719 | Sorghum | golgi, mitochondrion, peroxisome | 50.73 | 46.86 |
| AT5G25970.2 | Thale cress | golgi | 43.93 | 46.77 |
| AT1G51770.1 | Thale cress | golgi | 44.9 | 45.57 |
| AT1G68390.1 | Thale cress | plastid | 44.9 | 45.34 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 42.48 | 44.64 |
| AT1G10880.1 | Thale cress | golgi | 40.05 | 42.75 |
| AT5G16170.1 | Thale cress | golgi | 41.5 | 41.61 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 39.56 | 39.0 |
| AT4G31350.4 | Thale cress | golgi | 33.25 | 36.44 |
| AT5G57270.5 | Thale cress | golgi | 31.31 | 33.25 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 31.31 | 33.16 |
| AT4G30060.1 | Thale cress | golgi | 31.8 | 32.67 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 30.34 | 31.73 |
| AT5G14550.1 | Thale cress | mitochondrion | 28.88 | 31.57 |
| AT1G11940.1 | Thale cress | golgi | 29.13 | 31.33 |
| AT1G62305.1 | Thale cress | golgi | 28.64 | 31.22 |
Protein Annotations
| MapMan:35.1 | EntrezGene:837567 | UniProt:A0A178WBH7 | ProteinID:AAD32878.1 | ProteinID:AEE28561.1 | ArrayExpress:AT1G10280 |
| EnsemblPlantsGene:AT1G10280 | RefSeq:AT1G10280 | TAIR:AT1G10280 | RefSeq:AT1G10280-TAIR-G | EnsemblPlants:AT1G10280.1 | TAIR:AT1G10280.1 |
| EMBL:BT029295 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_14 | EMBL:KJ139016 | RefSeq:NP_172499.1 |
| ProteinID:OAP15708.1 | PFAM:PF02485 | PO:PO:0000293 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF3 | UniProt:Q9SY70 |
| TMHMM:TMhelix | UniParc:UPI000009F8ED | : | : | : | : |
Description
At1g10280 [Source:UniProtKB/TrEMBL;Acc:Q9SY70]
Coordinates
chr1:-:3366493..3369125
Molecular Weight (calculated)
47253.2 Da
IEP (calculated)
7.032
GRAVY (calculated)
-0.322
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGGKEEGE KHIGLLKLAQ TLSFLLIFMA GIIIGLAASS HIDRYFNSLP RMFSSTTNLQ SIPFSTPDYS NCTIIHRDCT GNDDNESDDG GVKAEKPKVR
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.