Factsheet for TraesCSU01G137600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G616400.1	Wheat	golgi	96.96	99.04
TraesCS2D01G566600.1	Wheat	cytosol, golgi, plasma membrane	95.55	98.08
HORVU2Hr1G127680.1	Barley	cytosol, golgi, plasma membrane	91.57	93.77
Os04t0272400-01	Rice	golgi, nucleus, peroxisome	70.02	72.57
Zm00001d026711_P001	Maize	cytosol, golgi, plasma membrane	69.56	67.96
EES11719	Sorghum	golgi, mitochondrion, peroxisome	70.02	67.04
VIT_12s0035g01710.t01	Wine grape	golgi	49.65	55.94
CDY31036	Canola	golgi	48.95	55.44
CDX93443	Canola	golgi	49.18	54.69
CDX94911	Canola	golgi	49.18	54.55
CDY20644	Canola	golgi	49.41	54.1
PGSC0003DMT400063986	Potato	golgi	49.88	53.65
GSMUA_Achr8P32350_001	Banana	golgi, mitochondrion	49.88	53.52
KRH26270	Soybean	golgi	47.54	53.0
Solyc01g103150.2.1	Tomato	golgi	49.18	52.9
Bra018450.1-P	Field mustard	golgi	49.18	51.98
KRH06031	Soybean	golgi, plasma membrane, plastid	47.78	51.78
AT1G10280.1	Thale cress	golgi	49.41	51.21
Bra019951.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	49.65	51.21

Protein Annotations

EnsemblPlants:TraesCSU01G137600.1	EnsemblPlantsGene:TraesCSU01G137600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF25	PFAM:PF02485
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrUn:+:124906086..124907369

Molecular Weight (calculated)

48409.5 Da

IEP (calculated)

8.571

GRAVY (calculated)

-0.186

Length

427 amino acids

Sequence
(BLAST)

001: MKQLKPRRVG AGDEEAAAGV VVPLAPRKDY CCWSWSWSWS WSWSSWCLLR AFTLLLVLLT GVLIGFGASA NISRYYYYTL LTGTGASSSS SPPSLISSNS
101: PTPPSTLAMS SEQHISQPFM SFVHPGSPEG HSMTDAELFW RASMVPRVEE YPYQRVPKVA FLFLTRGPLP FARLWERFFR GHEGLYSVYV HALPEYVLNV
201: SATSPFYGRQ IPSRDVSWGS ITLVDAEKRL LANALLDHSN QRFVLVSESC VPVFNFPTVY EYLINSAASY VESYNIDVPQ CAGRYNPRMA PDVTEEQWRK
301: GSEWFELSRE LAVDIVADRR YYHVFRKHCT PSCYPDEHYI PTYLHLVHGP RNANRTITWV DWSRGGPHPA RYGKASVTKE FIQAIRNNGT QCLYNGRPTT
401: VCYLFARKFA PSALGTLINL TTTLLDF

Best Arabidopsis Sequence Match ( AT1G10280.1 )
(BLAST)

001: MARGGKEEGE KHIGLLKLAQ TLSFLLIFMA GIIIGLAASS HIDRYFNSLP RMFSSTTNLQ SIPFSTPDYS NCTIIHRDCT GNDDNESDDG GVKAEKPKVR
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF

Arabidopsis Description

At1g10280 [Source:UniProtKB/TrEMBL;Acc:Q9SY70]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.