Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- golgi 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G616400.1 | Wheat | golgi | 93.05 | 92.82 |
| TraesCS2D01G566600.1 | Wheat | cytosol, golgi, plasma membrane | 92.33 | 92.55 |
| TraesCSU01G137600.1 | Wheat | cytosol, golgi, plasma membrane | 93.77 | 91.57 |
| Os04t0272400-01 | Rice | golgi, nucleus, peroxisome | 71.7 | 72.57 |
| Zm00001d026711_P001 | Maize | cytosol, golgi, plasma membrane | 70.5 | 67.28 |
| EES11719 | Sorghum | golgi, mitochondrion, peroxisome | 71.22 | 66.59 |
| HORVU7Hr1G076790.5 | Barley | golgi | 64.51 | 65.77 |
| VIT_12s0035g01710.t01 | Wine grape | golgi | 50.12 | 55.15 |
| CDY31036 | Canola | golgi | 49.4 | 54.64 |
| CDX93443 | Canola | golgi | 49.4 | 53.65 |
| CDX94911 | Canola | golgi | 49.4 | 53.51 |
| CDY20644 | Canola | golgi | 49.88 | 53.33 |
| PGSC0003DMT400063986 | Potato | golgi | 50.36 | 52.9 |
| GSMUA_Achr8P32350_001 | Banana | golgi, mitochondrion | 50.36 | 52.76 |
| KRH26270 | Soybean | golgi | 47.96 | 52.22 |
| Solyc01g103150.2.1 | Tomato | golgi | 49.64 | 52.14 |
| HORVU1Hr1G085260.1 | Barley | cytosol | 29.5 | 51.25 |
| HORVU3Hr1G081930.2 | Barley | golgi | 47.96 | 51.15 |
| Bra018450.1-P | Field mustard | golgi | 49.4 | 50.99 |
| KRH06031 | Soybean | golgi, plasma membrane, plastid | 47.96 | 50.76 |
| AT1G10280.1 | Thale cress | golgi | 49.64 | 50.24 |
| Bra019951.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 49.64 | 50.0 |
| HORVU5Hr1G077980.1 | Barley | cytosol, plastid | 21.1 | 48.09 |
| HORVU4Hr1G010270.2 | Barley | golgi, peroxisome | 43.17 | 45.0 |
| HORVU3Hr1G007160.1 | Barley | cytosol, golgi | 22.3 | 43.06 |
| HORVU2Hr1G100480.3 | Barley | cytosol | 31.65 | 40.62 |
| HORVU5Hr1G001380.1 | Barley | endoplasmic reticulum, golgi, peroxisome, plastid | 39.33 | 40.0 |
| HORVU5Hr1G078030.1 | Barley | cytosol, golgi, peroxisome, plastid | 39.09 | 39.0 |
| HORVU5Hr1G001360.2 | Barley | endoplasmic reticulum, golgi, peroxisome, plastid | 34.77 | 38.36 |
| HORVU7Hr1G097200.3 | Barley | golgi | 32.85 | 37.03 |
| HORVU7Hr1G109810.1 | Barley | golgi | 32.37 | 35.71 |
| HORVU6Hr1G030990.4 | Barley | golgi | 32.13 | 34.36 |
| HORVU3Hr1G065000.4 | Barley | cytosol | 25.9 | 33.44 |
| HORVU0Hr1G039960.6 | Barley | golgi | 19.9 | 31.92 |
| HORVU1Hr1G085240.4 | Barley | golgi, mitochondrion, plastid | 33.57 | 29.79 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G127680.1 | EnsemblPlantsGene:HORVU2Hr1G127680 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | InterPro:Glyco_trans_14 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF25 |
| PFAM:PF02485 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B4616F2 | UniProt:A0A287JUJ2 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr2H:+:767808284..767810178
Molecular Weight (calculated)
47438.6 Da
IEP (calculated)
8.440
GRAVY (calculated)
-0.201
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQLKPRRGT GGDEEAAAGV VVPLTPRKED YCCWSWSWSS WCLLKAFTLL LVLLTGVLIG FAASANISRY YYYTTLLTTT TTPTTPASLI STNSPTPMAM
101: AEQQMSQPFM SFVHPGSPEG HSMTDAELFW RASMVARVEE YPYQRVPKVA FLFLTRGPLP FARLWERFFR GHEGLYSVYV HALPEYVLNV SATSPFHGRQ
201: IPSRDVSWGS ITLVDAEKRL LANALLDHSN QRFVLVSESC VPVFNFPTVY EYLINSATSY VESYNIDVPQ CAGRYNPRMA PDVTEEQWRK GSEWFELSRE
301: LAVDIVADRR YYHVFRKHCT PSCYPDEHYI PTYLHLVHGP RNANRTITWV DWSRGGPHPA RYGKASVTRE FIQAIRNNGT QCLYNGRPTT VCYLFARKFA
401: PSALGTLINL TTTLLDF
101: AEQQMSQPFM SFVHPGSPEG HSMTDAELFW RASMVARVEE YPYQRVPKVA FLFLTRGPLP FARLWERFFR GHEGLYSVYV HALPEYVLNV SATSPFHGRQ
201: IPSRDVSWGS ITLVDAEKRL LANALLDHSN QRFVLVSESC VPVFNFPTVY EYLINSATSY VESYNIDVPQ CAGRYNPRMA PDVTEEQWRK GSEWFELSRE
301: LAVDIVADRR YYHVFRKHCT PSCYPDEHYI PTYLHLVHGP RNANRTITWV DWSRGGPHPA RYGKASVTRE FIQAIRNNGT QCLYNGRPTT VCYLFARKFA
401: PSALGTLINL TTTLLDF
001: MARGGKEEGE KHIGLLKLAQ TLSFLLIFMA GIIIGLAASS HIDRYFNSLP RMFSSTTNLQ SIPFSTPDYS NCTIIHRDCT GNDDNESDDG GVKAEKPKVR
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF
Arabidopsis Description
At1g10280 [Source:UniProtKB/TrEMBL;Acc:Q9SY70]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.