Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006342.1-P | Field mustard | cytosol | 73.48 | 87.03 |
| CDX70676 | Canola | cytosol, golgi, nucleus | 83.45 | 85.32 |
| CDX78674 | Canola | cytosol, golgi, plasma membrane | 82.73 | 84.37 |
| CDX69465 | Canola | golgi | 80.54 | 81.73 |
| Bra008639.1-P | Field mustard | golgi | 80.29 | 81.48 |
| VIT_14s0006g02700.t01 | Wine grape | cytosol | 48.42 | 67.23 |
| CDY26504 | Canola | cytosol | 24.57 | 66.45 |
| KRH46947 | Soybean | cytosol | 42.82 | 58.47 |
| KRH01729 | Soybean | cytosol | 42.82 | 58.47 |
| AT5G11730.1 | Thale cress | golgi | 43.8 | 46.63 |
| AT1G10880.1 | Thale cress | golgi | 43.55 | 46.37 |
| AT5G25970.2 | Thale cress | golgi | 42.82 | 45.48 |
| AT3G21310.1 | Thale cress | golgi | 39.9 | 42.82 |
| AT1G68390.1 | Thale cress | plastid | 42.34 | 42.65 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 42.58 | 41.87 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 39.66 | 41.58 |
| AT1G10280.1 | Thale cress | golgi | 41.61 | 41.5 |
| AT1G51770.1 | Thale cress | golgi | 40.39 | 40.89 |
| AT4G31350.4 | Thale cress | golgi | 32.36 | 35.37 |
| AT4G30060.1 | Thale cress | golgi | 33.33 | 34.16 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 30.9 | 32.23 |
| AT5G57270.5 | Thale cress | golgi | 30.41 | 32.22 |
| AT5G14550.1 | Thale cress | mitochondrion | 28.95 | 31.57 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 29.44 | 31.11 |
| AT1G62305.1 | Thale cress | golgi | 28.22 | 30.69 |
| AT1G11940.1 | Thale cress | golgi | 27.49 | 29.5 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831475 | ProteinID:AED92257.1 | ArrayExpress:AT5G16170 | EnsemblPlantsGene:AT5G16170 | RefSeq:AT5G16170 |
| TAIR:AT5G16170 | RefSeq:AT5G16170-TAIR-G | EnsemblPlants:AT5G16170.1 | TAIR:AT5G16170.1 | Unigene:At.50459 | EMBL:BT023454 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_14 | EMBL:KJ138687 | RefSeq:NP_197121.2 | PFAM:PF02485 |
| PO:PO:0000293 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF27 | UniProt:Q4V3A2 | TMHMM:TMhelix | UniParc:UPI000034F218 |
| SEG:seg | : | : | : | : | : |
Description
At5g16170 [Source:UniProtKB/TrEMBL;Acc:Q4V3A2]
Coordinates
chr5:+:5277787..5279821
Molecular Weight (calculated)
47496.9 Da
IEP (calculated)
7.937
GRAVY (calculated)
-0.284
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISDHKSKK EEEQYPMITK PLRLILLQKG SYVLSSLFFV FGFSVGLFLC LQLKAVHMST TTTQRQPLWS TLLFNHTVHT TEMDIKQELQ LQVLQHNMSD
101: QELFTKASSL SSPTSSLSSS SWLGRRHNND GKMAVKVAFM FMTGGRLPLA GLWEKFFEGH EGFYSIYVHT NPSFQDSFPE TSVFYSRRIP SQPVYWGTSS
201: MVDAEKRLLA NALLDESNQR FVLLSDSCIP LYNFTTIYDY LTGTNLSFIG SFDDPRKSGR GRYNHTMYPH INITHWRKGS QWFETTRELA LHIIEDTVYY
301: KIFDQHCKPP CYMDEHYIPT LVHMLHGEMS ANRTLTWVDW SKAGPHPGRF IWPDITDEFL NRIRFKEECV YFGRGGENVT TSKCFLFARK FTAETLEPLL
401: RISPIVLGFG P
101: QELFTKASSL SSPTSSLSSS SWLGRRHNND GKMAVKVAFM FMTGGRLPLA GLWEKFFEGH EGFYSIYVHT NPSFQDSFPE TSVFYSRRIP SQPVYWGTSS
201: MVDAEKRLLA NALLDESNQR FVLLSDSCIP LYNFTTIYDY LTGTNLSFIG SFDDPRKSGR GRYNHTMYPH INITHWRKGS QWFETTRELA LHIIEDTVYY
301: KIFDQHCKPP CYMDEHYIPT LVHMLHGEMS ANRTLTWVDW SKAGPHPGRF IWPDITDEFL NRIRFKEECV YFGRGGENVT TSKCFLFARK FTAETLEPLL
401: RISPIVLGFG P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.