CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
golgi 3
extracellular 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008639.1-P	Field mustard	golgi	99.75	99.75
CDX70676	Canola	cytosol, golgi, nucleus	83.46	84.08
CDX78674	Canola	cytosol, golgi, plasma membrane	83.21	83.62
AT5G16170.1	Thale cress	golgi	81.73	80.54
CDY26504	Canola	cytosol	27.9	74.34
VIT_14s0006g02700.t01	Wine grape	cytosol	48.64	66.55
KRH46947	Soybean	cytosol	44.44	59.8
KRH01729	Soybean	cytosol	43.95	59.14
CDX80552	Canola	cytosol	19.26	50.98
CDY19328	Canola	golgi, mitochondrion	44.2	47.35
CDX78440	Canola	cytosol	37.28	46.75
CDX97141	Canola	golgi	44.44	46.63
CDX69735	Canola	golgi	44.2	46.37
CDX97139	Canola	golgi	44.2	46.37
CDX70417	Canola	cytosol	34.32	46.33
CDY31036	Canola	golgi	41.23	44.3
CDX73016	Canola	mitochondrion	37.53	43.8
CDX93443	Canola	golgi	41.23	43.49
CDX78439	Canola	golgi	42.96	43.39
CDX94911	Canola	golgi	40.99	43.12
CDY20644	Canola	golgi	41.48	43.08
CDY20597	Canola	golgi	36.05	42.94
CDX87842	Canola	golgi	41.23	42.93
CDX97140	Canola	golgi	43.21	42.68
CDY43927	Canola	golgi	40.99	42.67
CDY51451	Canola	golgi	40.0	42.52
CDX81507	Canola	golgi	42.96	42.44
CDY44904	Canola	golgi	42.96	42.44
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	39.51	41.99
CDX96025	Canola	golgi, vacuole	42.96	41.83
CDX88209	Canola	golgi	35.8	41.43
CDY59035	Canola	golgi	42.72	41.09
CDX96026	Canola	golgi	40.0	40.91
CDX70416	Canola	golgi	42.72	39.59
CDX89388	Canola	cytosol	22.22	39.47
CDY49466	Canola	cytosol	23.21	36.58
CDX92736	Canola	mitochondrion	32.35	34.56
CDX68738	Canola	golgi	31.85	34.31
CDY28259	Canola	golgi	31.85	34.31
CDY46724	Canola	mitochondrion	34.07	34.24
CDY30178	Canola	mitochondrion	33.83	34.08
CDY42774	Canola	mitochondrion	31.85	34.04
CDY25922	Canola	golgi	32.59	33.93
CDY38285	Canola	golgi	32.59	33.93
CDY70337	Canola	golgi	31.11	33.78
CDY11878	Canola	golgi	32.1	33.42
CDX88613	Canola	golgi	32.1	33.42
CDY03552	Canola	golgi, mitochondrion	32.84	33.17
CDX94406	Canola	golgi	30.62	32.72
CDX82625	Canola	mitochondrion	31.11	31.9
CDY03361	Canola	mitochondrion	31.11	31.9
CDY66853	Canola	mitochondrion	30.86	31.57
CDY12850	Canola	mitochondrion	30.86	31.41
CDX83505	Canola	mitochondrion	30.86	31.41
CDY01412	Canola	mitochondrion	30.86	31.33
CDY09869	Canola	mitochondrion	28.15	31.15
CDX69574	Canola	mitochondrion	28.15	31.15
CDY51089	Canola	golgi, mitochondrion	30.37	31.14
CDY31228	Canola	golgi	27.16	29.73
CDY08638	Canola	mitochondrion	27.65	29.55
CDY24895	Canola	mitochondrion	27.16	29.49
CDY34605	Canola	golgi	27.41	29.37
CDY57290	Canola	cytosol	24.94	29.19
CDY21023	Canola	golgi	26.91	28.99
CDY66012	Canola	mitochondrion	25.93	28.77
CDX97918	Canola	golgi	42.22	27.1
CDY14193	Canola	mitochondrion	33.33	25.76
CDY66259	Canola	cytosol	23.46	22.09
CDX73017	Canola	cytosol	0.49	14.29

Protein Annotations

EnsemblPlants:CDX69465	EnsemblPlantsGene:GSBRNA2T00135449001	GO:A0A078BXF2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF27
PFAM:PF02485	ProteinID:CDX69465	ProteinID:CDX69465.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEBE98
MapMan:35.1	:	:	:	:	:

Description

BnaA10g18140D

Coordinates

chrLK031790:-:360334..361935

Molecular Weight (calculated)

47115.3 Da

IEP (calculated)

7.935

GRAVY (calculated)

-0.318

Length

405 amino acids

Sequence
(BLAST)

001: MGITDQKSKK EEEHLLISKP VRLILLHNGS HVLRSLFFII GFSIGLFLCL QLKAFHMSAP KTHQTLWSTL LFNHSTTMEI KRESQTQLLQ HNMTDQELFS
101: KISSLSSPSS SSSSSWFWRR HNNDEKIVVK VAFMFLTGGG LPLADLWDKF FEGHEGFYSI YVHTNPSFQE HYPETSVFYS RRIPSQAVYW GTSTMVDAER
201: RLLANALLDE SNQRFVLLSD SCIPLFNFTT IYDYLTGTNL SYIGSFDDPR TPGRGRYNPK MYPQINITHW RKGSQWFETT RELALHIIED TVYYKIFDQY
301: CKPPCYMDEH YIPTFVHMLH GEMSANRSLT WVDWSRAGPH PARFIWPDVT DEFLNRIRFT DKCPYYGKDS ENITSSKCVL FARKFTKETL EPLLRISPLV
401: LGFGP

Best Arabidopsis Sequence Match ( AT5G16170.1 )
(BLAST)

001: MSISDHKSKK EEEQYPMITK PLRLILLQKG SYVLSSLFFV FGFSVGLFLC LQLKAVHMST TTTQRQPLWS TLLFNHTVHT TEMDIKQELQ LQVLQHNMSD
101: QELFTKASSL SSPTSSLSSS SWLGRRHNND GKMAVKVAFM FMTGGRLPLA GLWEKFFEGH EGFYSIYVHT NPSFQDSFPE TSVFYSRRIP SQPVYWGTSS
201: MVDAEKRLLA NALLDESNQR FVLLSDSCIP LYNFTTIYDY LTGTNLSFIG SFDDPRKSGR GRYNHTMYPH INITHWRKGS QWFETTRELA LHIIEDTVYY
301: KIFDQHCKPP CYMDEHYIPT LVHMLHGEMS ANRTLTWVDW SKAGPHPGRF IWPDITDEFL NRIRFKEECV YFGRGGENVT TSKCFLFARK FTAETLEPLL
401: RISPIVLGFG P

Arabidopsis Description

At5g16170 [Source:UniProtKB/TrEMBL;Acc:Q4V3A2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.