CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 1
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033941.1-P	Field mustard	golgi	97.07	97.07
CDY44904	Canola	golgi	97.07	97.07
CDX96025	Canola	golgi, vacuole	88.29	87.02
CDY59035	Canola	golgi	87.8	85.51
AT1G68390.1	Thale cress	plastid	80.73	81.13
CDX96026	Canola	golgi	60.98	63.13
CDY70337	Canola	golgi	50.73	55.76
CDX73016	Canola	mitochondrion	42.2	49.86
CDX78440	Canola	cytosol	38.29	48.61
CDY31036	Canola	golgi	43.41	47.21
CDY19328	Canola	golgi, mitochondrion	43.41	47.09
CDX97139	Canola	golgi	44.15	46.89
CDX94911	Canola	golgi	43.9	46.75
CDX97141	Canola	golgi	43.9	46.63
CDX69735	Canola	golgi	43.9	46.63
CDX93443	Canola	golgi	43.41	46.35
CDY51451	Canola	golgi	42.93	46.19
CDX70417	Canola	cytosol	33.66	46.0
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	42.44	45.67
CDY20644	Canola	golgi	43.41	45.64
CDX87842	Canola	golgi	42.93	45.24
CDX80552	Canola	cytosol	16.83	45.1
CDY43927	Canola	golgi	42.44	44.73
CDX70676	Canola	cytosol, golgi, nucleus	43.17	44.03
CDX78439	Canola	golgi	42.68	43.64
CDX97140	Canola	golgi	43.41	43.41
CDX78674	Canola	cytosol, golgi, plasma membrane	42.44	43.18
CDX69465	Canola	golgi	42.44	42.96
CDY20597	Canola	golgi	34.63	41.76
CDX88209	Canola	golgi	35.37	41.43
CDX70416	Canola	golgi	42.68	40.05
CDY26504	Canola	cytosol	14.15	38.16
CDX89388	Canola	cytosol	20.73	37.28
CDX68738	Canola	golgi	33.41	36.44
CDY28259	Canola	golgi	33.41	36.44
CDY49466	Canola	cytosol	21.71	34.63
CDX92736	Canola	mitochondrion	31.46	34.04
CDY42774	Canola	mitochondrion	31.22	33.77
CDY46724	Canola	mitochondrion	32.44	33.0
CDY03552	Canola	golgi, mitochondrion	32.2	32.92
CDY30178	Canola	mitochondrion	32.2	32.84
CDX94406	Canola	golgi	30.24	32.72
CDY38285	Canola	golgi	30.24	31.88
CDY12850	Canola	mitochondrion	30.73	31.66
CDX83505	Canola	mitochondrion	30.73	31.66
CDY01412	Canola	mitochondrion	30.73	31.58
CDY03361	Canola	mitochondrion	30.24	31.39
CDX88613	Canola	golgi	29.76	31.36
CDY25922	Canola	golgi	29.76	31.36
CDY11878	Canola	golgi	29.76	31.36
CDY66853	Canola	mitochondrion	30.24	31.31
CDY51089	Canola	golgi, mitochondrion	30.0	31.14
CDX82625	Canola	mitochondrion	29.76	30.89
CDY08638	Canola	mitochondrion	28.05	30.34
CDY09869	Canola	mitochondrion	27.07	30.33
CDX69574	Canola	mitochondrion	27.07	30.33
CDY34605	Canola	golgi	27.8	30.16
CDY21023	Canola	golgi	27.56	30.05
CDY24895	Canola	mitochondrion	27.32	30.03
CDY57290	Canola	cytosol	25.12	29.77
CDY31228	Canola	golgi	26.83	29.73
CDY66012	Canola	mitochondrion	25.85	29.04
CDX97918	Canola	golgi	41.22	26.78
CDY14193	Canola	mitochondrion	32.2	25.19
CDY66259	Canola	cytosol	22.93	21.86
CDX73017	Canola	cytosol	0.49	14.29

Protein Annotations

EnsemblPlants:CDX81507	EnsemblPlantsGene:GSBRNA2T00135145001	GO:A0A078CXL8	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF56
PFAM:PF02485	ProteinID:CDX81507	ProteinID:CDX81507.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE16AD
MapMan:35.1	:	:	:	:	:

Description

BnaC02g18110D

Coordinates

chrLK031825:+:548998..551285

Molecular Weight (calculated)

47219.0 Da

IEP (calculated)

9.470

GRAVY (calculated)

-0.260

Length

410 amino acids

Sequence
(BLAST)

001: MKNLKEQSSF LSSSSPSLVA KLLNAQYHHF LNLISFSLIL CCGIIIGILL HSSLQDISST SSLNIQRISQ LFLVSSPPPP TIPSPPPPPS KPVHVGLKVF
101: LRSPKKIMHD MEDEELLWRA SMAPKIRSYP FYRTPKVAFM FLTKGYLPLA PLWEKFFRGH EDLFNIYVHS YPSNNESYPE GSVFHGRQIP SKRVEWGYVN
201: MVEAEQRLLA NALLDISNER FVLLSESCIP LFNFTTVYSY LTTSTQTHVE SYDQLGGVGR GRYSPEMKPG VQLRHWRKGS QWFELDRAMA LEIISDTTYW
301: PLFYRYCHHG CYADEHYIPT LLNIKSSLGR RNSNRTLTWV DWRNGGPHPT RFIRYEVTEE LLVKLRNGGG ENRQCYHNGE KTNVCYLFAR KFLPTALGRL
401: LRLAPSVLYF

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.