CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010307.1-P	Field mustard	golgi, mitochondrion	99.25	99.25
AT4G30060.1	Thale cress	golgi	89.78	89.78
CDY46724	Canola	mitochondrion	88.28	87.84
CDY30178	Canola	mitochondrion	87.78	87.56
CDY66853	Canola	mitochondrion	76.06	77.02
CDY03361	Canola	mitochondrion	75.06	76.2
CDY14193	Canola	mitochondrion	99.0	75.76
CDY12850	Canola	mitochondrion	73.82	74.37
CDX83505	Canola	mitochondrion	73.82	74.37
CDY01412	Canola	mitochondrion	73.82	74.19
CDX82625	Canola	mitochondrion	71.57	72.66
CDY51089	Canola	golgi, mitochondrion	71.32	72.41
CDX89388	Canola	cytosol	39.4	69.3
KRH19073	Soybean	golgi	64.59	65.9
Solyc07g008940.2.1	Tomato	golgi	64.09	65.39
PGSC0003DMT400073984	Potato	golgi	63.34	64.63
CDY49466	Canola	cytosol	41.15	64.2
CDX88613	Canola	golgi	60.1	61.95
CDY11878	Canola	golgi	60.1	61.95
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	62.09	61.79
CDY38285	Canola	golgi	59.85	61.7
KRH02808	Soybean	golgi	64.59	61.67
CDY25922	Canola	golgi	59.6	61.44
CDX94406	Canola	golgi	57.86	61.21
CDY42774	Canola	mitochondrion	56.86	60.16
CDX92736	Canola	mitochondrion	56.61	59.89
HORVU2Hr1G100480.3	Barley	cytosol	47.13	58.15
Zm00001d026261_P001	Maize	golgi, mitochondrion	54.61	57.18
EES12818	Sorghum	golgi	54.86	56.85
KXG24737	Sorghum	golgi	54.11	56.66
Zm00001d002382_P002	Maize	golgi, mitochondrion	54.61	56.59
Zm00001d024348_P002	Maize	mitochondrion	52.12	56.49
CDY66012	Canola	mitochondrion	50.87	55.89
CDY28259	Canola	golgi	52.37	55.85
CDX68738	Canola	golgi	52.37	55.85
TraesCS2D01G428700.2	Wheat	mitochondrion	52.12	55.0
TraesCS2B01G452200.4	Wheat	mitochondrion	51.87	54.74
TraesCS2A01G430900.2	Wheat	mitochondrion	51.62	53.63
Os08t0225400-01	Rice	cytosol, golgi	54.36	52.78
CDY57290	Canola	cytosol	44.39	51.45
CDX78440	Canola	cytosol	30.92	38.39
CDX73016	Canola	mitochondrion	32.42	37.46
CDY43927	Canola	golgi	35.41	36.5
CDX87842	Canola	golgi	35.41	36.5
CDX70417	Canola	cytosol	26.68	35.67
CDX80552	Canola	cytosol	13.47	35.29
CDY51451	Canola	golgi	33.17	34.91
CDX97139	Canola	golgi	33.17	34.46
CDX97141	Canola	golgi	33.17	34.46
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	32.67	34.38
CDX69735	Canola	golgi	32.92	34.2
CDY31036	Canola	golgi	31.67	33.69
CDX78674	Canola	cytosol, golgi, plasma membrane	33.42	33.25
CDX70676	Canola	cytosol, golgi, nucleus	33.17	33.08
CDY08638	Canola	mitochondrion	31.17	32.98
CDY24895	Canola	mitochondrion	30.67	32.98
CDX69465	Canola	golgi	33.17	32.84
CDX94911	Canola	golgi	31.42	32.73
CDX96025	Canola	golgi, vacuole	33.92	32.69
CDX97140	Canola	golgi	33.42	32.68
CDX78439	Canola	golgi	32.67	32.67
CDX96026	Canola	golgi	32.17	32.58
CDX93443	Canola	golgi	31.17	32.55
CDY19328	Canola	golgi, mitochondrion	30.67	32.54
CDX69574	Canola	mitochondrion	29.68	32.51
CDY09869	Canola	mitochondrion	29.43	32.24
CDX81507	Canola	golgi	32.92	32.2
CDY59035	Canola	golgi	33.67	32.07
CDY20644	Canola	golgi	31.17	32.05
CDY44904	Canola	golgi	32.67	31.95
CDX88209	Canola	golgi	27.68	31.71
CDY26504	Canola	cytosol	11.97	31.58
CDY34605	Canola	golgi	28.68	30.42
CDY20597	Canola	golgi	25.69	30.29
CDY31228	Canola	golgi	27.68	30.0
CDY21023	Canola	golgi	27.93	29.79
CDX70416	Canola	golgi	32.42	29.75
CDY70337	Canola	golgi	25.69	27.61
CDY66259	Canola	cytosol	24.19	22.56
CDX97918	Canola	golgi	29.68	18.86
CDX73017	Canola	cytosol	0.5	14.29

Protein Annotations

EnsemblPlants:CDY03552	EnsemblPlantsGene:GSBRNA2T00116275001	GO:A0A078ER92	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF1
PFAM:PF02485	ProteinID:CDY03552	ProteinID:CDY03552.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EC45A4
MapMan:35.1	:	:	:	:	:

Description

BnaC03g68110D

Coordinates

chrLK031944:+:253867..256875

Molecular Weight (calculated)

46844.2 Da

IEP (calculated)

8.931

GRAVY (calculated)

-0.375

Length

401 amino acids

Sequence
(BLAST)

001: MKAAKRWSLG NLRDMASSLP GPRHRAPSRR RARVYIIMAL SLIAFFAVIA YMYPHHSKRA CYMISSRGCK ALADWLPPSL REYSDDEIAA RVVISEILSN
101: PPVIRKDSKI AFMFLTPGAL PFERLWDRFF QEHEGKFSVY IHASKERPVH YSRYFVNREI RSDEVVWGRI SMVDAERRLL ANALRDPTNQ QFVLLSDSCV
201: PLRSFEYIYN YLMYSNVSYV DCFDDLGQHG SGRHMNHMLP EIQKKDFRKG AQWFTMKRQH AVATMADSLY YSKFRDYCGP GIENNKNCIA DEHYLPTFFH
301: MLDPTGISNW TVTQVDWSER KWHPKTYMPE DVTHELLNNL TSTDTVVHVT SVGVGEEIWM PCMWNGIKRP CYLFGRKFHP DTLDKLLDLF SNYTKSVSWQ
401: L

Best Arabidopsis Sequence Match ( AT4G30060.1 )
(BLAST)

001: MKAVKRWSIG NLADIPVSLP GARYRAPPPG RRRVWIIMVL SLITMFFIMA YMYPHHSKRA CYMISSRGCK ALADWLPPSL REYSDDEIAA RVVIREILSS
101: PPVIRKNSKI AFMFLTPGTL PFERLWDRFF LGHEGKFSVY IHASKERPVH YSRYFLNREI RSDEVVWGRI SMVDAERRLL ANALRDTSNQ QFVLLSDSCV
201: PLRSFEYIYN YLMHSNLSYV DCFDDPGQHG AGRHMNHMLP EIPKKDFRKG AQWFTMKRQH AVATMADSLY YSKFRDYCGP GIENNKNCIA DEHYLPTFFH
301: MLDPGGIANW TVTQVDWSER KWHPKTYMPE DITHELLNNL TSTDTLVHVT SVGMGEEIWM PCMWNGIQRP CYLFGRKFHP DTLDKLLDLF SNYTRSVTWN
401: L

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4E9]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.