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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:
  • nucleus 1
  • golgi 1
  • mitochondrion 1
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, plasma membrane
Any Predictor:cytosol, golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra006342.1-P Field mustard cytosol 85.86 99.71
CDX70676 Canola cytosol, golgi, nucleus 92.56 92.79
CDX69465 Canola golgi 83.62 83.21
AT5G16170.1 Thale cress golgi 84.37 82.73
VIT_14s0006g02700.t01 Wine grape cytosol 49.63 67.57
CDY26504 Canola cytosol 25.06 66.45
KRH46947 Soybean cytosol 43.42 58.14
KRH01729 Soybean cytosol 43.42 58.14
CDX80552 Canola cytosol 19.11 50.33
CDY19328 Canola golgi, mitochondrion 45.41 48.41
CDX78440 Canola cytosol 37.72 47.06
CDX70417 Canola cytosol 34.74 46.67
CDX97141 Canola golgi 43.92 45.85
CDX69735 Canola golgi 43.42 45.34
CDX97139 Canola golgi 43.42 45.34
CDY20597 Canola golgi 37.97 45.0
CDY31036 Canola golgi 41.44 44.3
CDX93443 Canola golgi 41.44 43.49
CDX78439 Canola golgi 43.18 43.39
CDX73016 Canola mitochondrion 37.22 43.23
CDX94911 Canola golgi 41.19 43.12
CDY20644 Canola golgi 41.69 43.08
CDX81507 Canola golgi 43.18 42.44
CDY44904 Canola golgi 43.18 42.44
CDY51451 Canola golgi 39.95 42.26
CDX96025 Canola golgi, vacuole 43.42 42.07
CDY56916 Canola cytosol, golgi, plasma membrane, plastid 39.45 41.73
CDY59035 Canola golgi 43.42 41.57
CDX97140 Canola golgi 42.18 41.46
CDX87842 Canola golgi 39.95 41.39
CDY43927 Canola golgi 39.95 41.39
CDX96026 Canola golgi 40.2 40.91
CDX88209 Canola golgi 34.74 40.0
CDX89388 Canola cytosol 22.33 39.47
CDX70416 Canola golgi 42.68 39.36
CDY49466 Canola cytosol 24.07 37.74
CDX92736 Canola mitochondrion 33.25 35.36
CDY11878 Canola golgi 33.99 35.22
CDX88613 Canola golgi 33.99 35.22
CDY25922 Canola golgi 33.75 34.96
CDY38285 Canola golgi 33.5 34.7
CDY30178 Canola mitochondrion 34.49 34.58
CDY28259 Canola golgi 32.26 34.57
CDX68738 Canola golgi 32.26 34.57
CDY42774 Canola mitochondrion 32.51 34.56
CDY46724 Canola mitochondrion 34.49 34.49
CDY70337 Canola golgi 31.76 34.32
CDX94406 Canola golgi 31.51 33.51
CDY03552 Canola golgi, mitochondrion 33.25 33.42
CDX82625 Canola mitochondrion 32.01 32.66
CDX69574 Canola mitochondrion 29.28 32.24
CDY51089 Canola golgi, mitochondrion 31.51 32.15
CDY09869 Canola mitochondrion 29.03 31.97
CDY31228 Canola golgi 29.28 31.89
CDY03361 Canola mitochondrion 31.02 31.65
CDY66853 Canola mitochondrion 31.02 31.57
CDY12850 Canola mitochondrion 31.02 31.41
CDX83505 Canola mitochondrion 31.02 31.41
CDY01412 Canola mitochondrion 31.02 31.33
CDY34605 Canola golgi 29.28 31.22
CDY08638 Canola mitochondrion 29.28 31.13
CDY21023 Canola golgi 29.03 31.12
CDY24895 Canola mitochondrion 28.78 31.1
CDY66012 Canola mitochondrion 27.3 30.14
CDY57290 Canola cytosol 25.81 30.06
CDX97918 Canola golgi 43.42 27.73
CDY14193 Canola mitochondrion 33.75 25.95
CDY66259 Canola cytosol 24.57 23.02
CDX73017 Canola cytosol 0.25 7.14
Protein Annotations
EnsemblPlants:CDX78674EnsemblPlantsGene:GSBRNA2T00130099001GO:A0A078CRJ5GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0008375GO:GO:0016020GO:GO:0016740InterPro:Glyco_trans_14PANTHER:PTHR31042PANTHER:PTHR31042:SF27
PFAM:PF02485ProteinID:CDX78674ProteinID:CDX78674.1SEG:segTMHMM:TMhelixUniParc:UPI0004EF270C
MapMan:35.1:::::
Description
BnaA03g05860D
Coordinates
chrLK031815:+:1774180..1775743
Molecular Weight (calculated)
46923.1 Da
IEP (calculated)
8.155
GRAVY (calculated)
-0.358
Length
403 amino acids
Sequence
(BLAST)
001: MGVIDQKSKK EDEHPMISKP SRLILLVKGK HLLSPLVFIT GFSIGLFLCL QLKSFHMPTM KTQQQSFWST LLFNHTTTME TKQELQLQVL QHNMTDQELF
101: TRVSSLSSSK SSSWFGWRYN NDEKMVVKVA FMFLTGRGLP LASLWDKFFE GHEGYYSIYI HTHPSFQDHY PETSVFYSRR IPSQAVYWGT SSMVDAERRL
201: LANALLDESN QRFVLLSDSC IPLYNFTTIY DYLTGTNLSF IGSFDDPRKS GRGRYNPQMH PQINITHWRK GSQWFETTRE LALHIISDTV YYKVFDQHCK
301: PPCYMDEHYI PTLVHMLHGE MSSNRSLTWV DWSKAGPHPG RFIWPDITDE FLNRIRFTEE CAYYGRDGEN VTTSKCFLFA RKFTKETLEP LLRISPAVLG
401: FGP
Best Arabidopsis Sequence Match ( AT5G16170.1 )
(BLAST)
001: MSISDHKSKK EEEQYPMITK PLRLILLQKG SYVLSSLFFV FGFSVGLFLC LQLKAVHMST TTTQRQPLWS TLLFNHTVHT TEMDIKQELQ LQVLQHNMSD
101: QELFTKASSL SSPTSSLSSS SWLGRRHNND GKMAVKVAFM FMTGGRLPLA GLWEKFFEGH EGFYSIYVHT NPSFQDSFPE TSVFYSRRIP SQPVYWGTSS
201: MVDAEKRLLA NALLDESNQR FVLLSDSCIP LYNFTTIYDY LTGTNLSFIG SFDDPRKSGR GRYNHTMYPH INITHWRKGS QWFETTRELA LHIIEDTVYY
301: KIFDQHCKPP CYMDEHYIPT LVHMLHGEMS ANRTLTWVDW SKAGPHPGRF IWPDITDEFL NRIRFKEECV YFGRGGENVT TSKCFLFARK FTAETLEPLL
401: RISPIVLGFG P
Arabidopsis Description
At5g16170 [Source:UniProtKB/TrEMBL;Acc:Q4V3A2]
SUBAcon: [golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.