Factsheet for VIT_14s0006g02700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03420.t01	Wine grape	cytosol	70.61	71.09
VIT_01s0011g03840.t01	Wine grape	cytosol	67.57	67.57
VIT_17s0000g03400.t01	Wine grape	cytosol	64.19	64.19
KRH46947	Soybean	cytosol	64.53	63.46
KRH01729	Soybean	cytosol	63.85	62.79
VIT_17s0000g03410.t01	Wine grape	cytosol	61.82	62.03
VIT_09s0002g02660.t01	Wine grape	cytosol	57.77	58.16
Bra006342.1-P	Field mustard	cytosol	67.23	57.35
CDX70676	Canola	cytosol, golgi, nucleus	67.91	50.0
CDX78674	Canola	cytosol, golgi, plasma membrane	67.57	49.63
CDX69465	Canola	golgi	66.55	48.64
Bra008639.1-P	Field mustard	golgi	66.55	48.64
AT5G16170.1	Thale cress	golgi	67.23	48.42
CDY26504	Canola	cytosol	24.66	48.03
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	60.47	46.49
VIT_12s0035g01710.t01	Wine grape	golgi	59.46	46.44
VIT_01s0011g03850.t01	Wine grape	golgi, plastid	62.84	45.93
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	38.51	35.19
VIT_04s0008g02630.t01	Wine grape	golgi	42.91	32.48
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	42.57	31.27
VIT_10s0116g00980.t01	Wine grape	golgi	39.19	30.53

Protein Annotations

EntrezGene:100244641	wikigene:100244641	MapMan:35.1	ProteinID:CBI33634	ProteinID:CBI33634.3	UniProt:D7TT12
EMBL:FN596245	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020
GO:GO:0016740	InterPro:Glyco_trans_14	EntrezGene:LOC100244641	wikigene:LOC100244641	PFAM:PF02485	PANTHER:PTHR31042
PANTHER:PTHR31042:SF27	UniParc:UPI0001BE3BEB	ArrayExpress:VIT_14s0006g02700	EnsemblPlantsGene:VIT_14s0006g02700	EnsemblPlants:VIT_14s0006g02700.t01	RefSeq:XP_002280674
RefSeq:XP_002280674.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:-:20721259..20722787

Molecular Weight (calculated)

34448.4 Da

IEP (calculated)

8.201

GRAVY (calculated)

-0.247

Length

296 amino acids

Sequence
(BLAST)

001: MSDEELFWRA SMVPKVQELP YKLVRKVAFM FLTKGPHPLV PLWEKFFEGH GGLYSIYVHP HPSFDESVPE TSVFHGRRIP SKPVYWGTAS MIDAERRLLA
101: NALLDFSNQR FVLLSESCIP LFNFTTTYNY LMASNLSFLG SFDDPRKPGR GRYNPQMWPA INISDWRKGS QWFEVHRELA VQIISDRKYY TIFGEYCHPP
201: CYMDEHYIPT LVNMLYVKMN SNRSITWVDW SRGGPHPSKF GWGDITDEFL NKIRYGSDCI YNGNTTNICF LFARKFLPTA LEPLLRIAPL LLGFDP

Best Arabidopsis Sequence Match ( AT5G16170.1 )
(BLAST)

001: MSISDHKSKK EEEQYPMITK PLRLILLQKG SYVLSSLFFV FGFSVGLFLC LQLKAVHMST TTTQRQPLWS TLLFNHTVHT TEMDIKQELQ LQVLQHNMSD
101: QELFTKASSL SSPTSSLSSS SWLGRRHNND GKMAVKVAFM FMTGGRLPLA GLWEKFFEGH EGFYSIYVHT NPSFQDSFPE TSVFYSRRIP SQPVYWGTSS
201: MVDAEKRLLA NALLDESNQR FVLLSDSCIP LYNFTTIYDY LTGTNLSFIG SFDDPRKSGR GRYNHTMYPH INITHWRKGS QWFETTRELA LHIIEDTVYY
301: KIFDQHCKPP CYMDEHYIPT LVHMLHGEMS ANRTLTWVDW SKAGPHPGRF IWPDITDEFL NRIRFKEECV YFGRGGENVT TSKCFLFARK FTAETLEPLL
401: RISPIVLGFG P

Arabidopsis Description

At5g16170 [Source:UniProtKB/TrEMBL;Acc:Q4V3A2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.