Factsheet for Bra006342.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 3
cytosol 2
peroxisome 1
extracellular 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78674	Canola	cytosol, golgi, plasma membrane	99.71	85.86
AT5G16170.1	Thale cress	golgi	87.03	73.48
Bra008639.1-P	Field mustard	golgi	84.73	72.59
VIT_14s0006g02700.t01	Wine grape	cytosol	57.35	67.23
KRH46947	Soybean	cytosol	50.14	57.81
KRH01729	Soybean	cytosol	50.14	57.81
Bra019894.1-P	Field mustard	golgi	49.86	45.89
Bra008941.1-P	Field mustard	golgi	48.99	44.04
Bra006113.1-P	Field mustard	golgi	48.41	43.52
Bra006114.1-P	Field mustard	golgi	44.09	42.74
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	42.36	42.0
Bra031273.1-P	Field mustard	golgi	45.53	41.47
Bra009874.1-P	Field mustard	golgi	46.11	41.45
Bra030418.1-P	Field mustard	golgi	44.96	40.1
Bra033941.1-P	Field mustard	golgi	46.97	39.76
Bra004303.1-P	Field mustard	golgi, vacuole	47.26	39.42
Bra018450.1-P	Field mustard	golgi	45.82	39.36
Bra004302.1-P	Field mustard	golgi	44.67	39.14
Bra019951.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	45.82	38.41
Bra011262.1-P	Field mustard	golgi	36.89	34.04
Bra002743.1-P	Field mustard	golgi	38.04	33.93
Bra013927.1-P	Field mustard	golgi, plastid	35.73	33.88
Bra024111.1-P	Field mustard	mitochondrion	35.73	33.07
Bra010307.1-P	Field mustard	golgi, mitochondrion	37.46	32.42
Bra010446.1-P	Field mustard	mitochondrion	35.73	31.88
Bra038843.1-P	Field mustard	mitochondrion	36.02	31.41
Bra036729.1-P	Field mustard	mitochondrion	35.45	31.06
Bra008752.1-P	Field mustard	mitochondrion	32.56	30.87
Bra012167.1-P	Field mustard	mitochondrion	35.45	30.83
Bra019138.1-P	Field mustard	plastid	34.29	30.51
Bra016802.1-P	Field mustard	golgi	32.85	30.32
Bra034487.1-P	Field mustard	mitochondrion	31.99	29.76
Bra031797.1-P	Field mustard	cytosol	27.95	28.7

Protein Annotations

EnsemblPlants:Bra006342.1	EnsemblPlants:Bra006342.1-P	EnsemblPlantsGene:Bra006342	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF27
PFAM:PF02485	SEG:seg	UniParc:UPI000253F595	UniProt:M4CQ53	MapMan:35.1	:

Description

AT5G16170 (E=9e-178) | unknown protein

Coordinates

chrA03:+:3100352..3101746

Molecular Weight (calculated)

40593.1 Da

IEP (calculated)

7.210

GRAVY (calculated)

-0.461

Length

347 amino acids

Sequence
(BLAST)

001: MPTMKTQQQS FWSTLLFNHT TTMETKQELQ LQVLQHNMTD QELFTRVSSL SSSKSSSWFG WRYNNDEKMV VKVAFMFLTG RGLPLASLWD KFFEGHEGYY
101: SIYIHTHPSF QDHYPETSVF YSRRIPSQAV YWGTSSMVDA ERRLLANALL DESNQKFVLL SDSCIPLYNF TTIYDYLTGT NLSFIGSFDD PRKSGRGRYN
201: PQMHPQINIT HWRKGSQWFE TTRELALHII SDTVYYKVFD QHCKPPCYMD EHYIPTLVHM LHGEMSSNRS LTWVDWSKAG PHPGRFIWPD ITDEFLNRIR
301: FTEECAYYGR DGENVTTSKC FLFARKFTKE TLEPLLRISP AVLGFGP

Best Arabidopsis Sequence Match ( AT5G16170.1 )
(BLAST)

001: MSISDHKSKK EEEQYPMITK PLRLILLQKG SYVLSSLFFV FGFSVGLFLC LQLKAVHMST TTTQRQPLWS TLLFNHTVHT TEMDIKQELQ LQVLQHNMSD
101: QELFTKASSL SSPTSSLSSS SWLGRRHNND GKMAVKVAFM FMTGGRLPLA GLWEKFFEGH EGFYSIYVHT NPSFQDSFPE TSVFYSRRIP SQPVYWGTSS
201: MVDAEKRLLA NALLDESNQR FVLLSDSCIP LYNFTTIYDY LTGTNLSFIG SFDDPRKSGR GRYNHTMYPH INITHWRKGS QWFETTRELA LHIIEDTVYY
301: KIFDQHCKPP CYMDEHYIPT LVHMLHGEMS ANRTLTWVDW SKAGPHPGRF IWPDITDEFL NRIRFKEECV YFGRGGENVT TSKCFLFARK FTAETLEPLL
401: RISPIVLGFG P

Arabidopsis Description

At5g16170 [Source:UniProtKB/TrEMBL;Acc:Q4V3A2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.