Factsheet for Bra004302.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 1
golgi 5
nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68380.1	Bra000214.1-P	AT2G41090.1	17360592
AT1G68380.1	Bra000214.1-P	AT2G41100.1	17360592
AT1G68380.1	Bra018296.1-P	AT3G51920.1	17360592
AT1G68380.1	Bra033467.1-P	AT3G51920.1	17360592
AT1G68380.1	Bra002368.1-P	AT5G21274.1	17360592
AT1G68380.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96026	Canola	golgi	99.75	99.75
AT1G68380.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	75.0	75.77
Bra004303.1-P	Field mustard	golgi, vacuole	64.9	61.78
Bra033941.1-P	Field mustard	golgi	63.38	61.22
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	41.41	46.86
Bra006114.1-P	Field mustard	golgi	40.4	44.69
Bra006342.1-P	Field mustard	cytosol	39.14	44.67
Bra031273.1-P	Field mustard	golgi	41.92	43.57
Bra030418.1-P	Field mustard	golgi	42.17	42.93
Bra006113.1-P	Field mustard	golgi	41.67	42.75
Bra008941.1-P	Field mustard	golgi	41.67	42.75
Bra019894.1-P	Field mustard	golgi	40.15	42.18
Bra018450.1-P	Field mustard	golgi	42.93	42.08
Bra019951.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	43.94	42.03
Bra009874.1-P	Field mustard	golgi	40.91	41.97
Bra008639.1-P	Field mustard	golgi	40.66	39.75
Bra011262.1-P	Field mustard	golgi	32.07	33.78
Bra010307.1-P	Field mustard	golgi, mitochondrion	32.83	32.42
Bra013927.1-P	Field mustard	golgi, plastid	29.8	32.24
Bra002743.1-P	Field mustard	golgi	31.57	32.13
Bra036729.1-P	Field mustard	mitochondrion	31.31	31.31
Bra024111.1-P	Field mustard	mitochondrion	29.55	31.2
Bra012167.1-P	Field mustard	mitochondrion	31.31	31.08
Bra034487.1-P	Field mustard	mitochondrion	28.79	30.56
Bra010446.1-P	Field mustard	mitochondrion	29.8	30.33
Bra016802.1-P	Field mustard	golgi	28.79	30.32
Bra038843.1-P	Field mustard	mitochondrion	30.05	29.9
Bra008752.1-P	Field mustard	mitochondrion	27.53	29.78
Bra019138.1-P	Field mustard	plastid	28.79	29.23
Bra031797.1-P	Field mustard	cytosol	24.49	28.7

Protein Annotations

EnsemblPlants:Bra004302.1	EnsemblPlants:Bra004302.1-P	EnsemblPlantsGene:Bra004302	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF56	PFAM:PF02485	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002541741	UniProt:M4CJB8
MapMan:35.1	:	:	:	:	:

Description

AT1G68380 (E=4e-147) | unknown protein

Coordinates

chrA07:-:17857107..17859042

Molecular Weight (calculated)

46435.1 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.247

Length

396 amino acids

Sequence
(BLAST)

001: MPTQKDRNSS SLFLVIKLLN PLLHHFLNLL FYFFLLCFGV VVGIIVHSSL EASSLPYYPT VQSVSQLVLV TSPPPPTSPS PLPQNYELEM FLRPPKINIM
101: HNMEDNELFW RASMDPKIRS YPFSRTPKVA FMFLTRGPLP LAPLWERFFR GCEGLFTIYI HTNPSYKESM PQGSVFLGRR IPSKRVDWAN ANMVDAERRL
201: LANALLDINN ERFLLLSESC IPLFNFTTIY SYLINSTQTH VDSYDLPFGR VRYSRRMYPH IHLHHWRKGS QWFELDRPMA LETVSDTFYW PIFRAYCRCP
301: DEHYFPTLLN LTPSLGSRNS NRTLTWTDWG KRRAHPRSFG GPEVNVEFLN WLRRSDKEYC EHKGVDKTRP CFLFARKFSS NALDKLLRFA STVMYF

Best Arabidopsis Sequence Match ( AT1G68380.1 )
(BLAST)

001: MPTQKDQNSP LSQVIELLKK LLHHFHNLLL YFFILWIGVI VGIIVYPSLQ GLSSPSSLTI QSVSQLFFVT PPPPILSPSF QDNGLDMFLI PLKNIMHDME
101: DNELLWRASM DPKIRDYPYP RIPKVAFMFL TWGPLPLAPL WERFFRGHEG LFTIYVHTNS SYDEFMPQDS VFYGRRIPSK RVDWGNANMV EAERRLLANA
201: LLDINNERFI LLSESCIPLF NFSTVYSFLI DSTLTHVDSY DLTIGRVRYD RRMYPHIRMH QWRKGSQWFE LDRAMALEVV SDTFYWPIFK AYSRCPDEHY
301: IPTLLNMRPS LGLRNANRTL TWTDWSKRRA HPRLFGEWEV NVEFLEWLRM KSVGDCKKNG ENKMRLCFLF ARKFSSTALD ELLRLASIVM YF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C3]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.