Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96026 | Canola | golgi | 75.77 | 75.0 |
| Bra004302.1-P | Field mustard | golgi | 75.77 | 75.0 |
| CDY70337 | Canola | golgi | 63.52 | 66.76 |
| AT1G68390.1 | Thale cress | plastid | 63.01 | 60.54 |
| AT3G21310.1 | Thale cress | golgi | 42.35 | 43.34 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 46.17 | 43.3 |
| AT1G10280.1 | Thale cress | golgi | 44.64 | 42.48 |
| AT5G25970.2 | Thale cress | golgi | 41.58 | 42.12 |
| AT1G51770.1 | Thale cress | golgi | 43.62 | 42.12 |
| AT5G11730.1 | Thale cress | golgi | 40.56 | 41.19 |
| AT5G16170.1 | Thale cress | golgi | 41.58 | 39.66 |
| AT1G10880.1 | Thale cress | golgi | 37.24 | 37.82 |
| AT4G31350.4 | Thale cress | golgi | 32.65 | 34.04 |
| AT5G57270.5 | Thale cress | golgi | 31.12 | 31.44 |
| AT4G30060.1 | Thale cress | golgi | 31.89 | 31.17 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 30.36 | 30.59 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 30.1 | 29.95 |
| AT1G62305.1 | Thale cress | golgi | 28.57 | 29.63 |
| AT1G11940.1 | Thale cress | golgi | 28.32 | 28.98 |
| AT5G14550.1 | Thale cress | mitochondrion | 27.55 | 28.65 |
Protein Annotations
| MapMan:35.1 | EntrezGene:843167 | ProteinID:AAF26044.1 | ProteinID:AEE34787.1 | EMBL:AK118158 | ArrayExpress:AT1G68380 |
| EnsemblPlantsGene:AT1G68380 | RefSeq:AT1G68380 | TAIR:AT1G68380 | RefSeq:AT1G68380-TAIR-G | EnsemblPlants:AT1G68380.1 | TAIR:AT1G68380.1 |
| Unigene:At.43390 | EMBL:BT005513 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_14 | EMBL:KJ138948 |
| RefSeq:NP_177005.1 | PFAM:PF02485 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF56 | UniProt:Q9M9C3 | TMHMM:TMhelix |
| UniParc:UPI000000C68C | SEG:seg | : | : | : | : |
Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C3]
Coordinates
chr1:-:25635838..25637462
Molecular Weight (calculated)
46230.2 Da
IEP (calculated)
8.780
GRAVY (calculated)
-0.147
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTQKDQNSP LSQVIELLKK LLHHFHNLLL YFFILWIGVI VGIIVYPSLQ GLSSPSSLTI QSVSQLFFVT PPPPILSPSF QDNGLDMFLI PLKNIMHDME
101: DNELLWRASM DPKIRDYPYP RIPKVAFMFL TWGPLPLAPL WERFFRGHEG LFTIYVHTNS SYDEFMPQDS VFYGRRIPSK RVDWGNANMV EAERRLLANA
201: LLDINNERFI LLSESCIPLF NFSTVYSFLI DSTLTHVDSY DLTIGRVRYD RRMYPHIRMH QWRKGSQWFE LDRAMALEVV SDTFYWPIFK AYSRCPDEHY
301: IPTLLNMRPS LGLRNANRTL TWTDWSKRRA HPRLFGEWEV NVEFLEWLRM KSVGDCKKNG ENKMRLCFLF ARKFSSTALD ELLRLASIVM YF
101: DNELLWRASM DPKIRDYPYP RIPKVAFMFL TWGPLPLAPL WERFFRGHEG LFTIYVHTNS SYDEFMPQDS VFYGRRIPSK RVDWGNANMV EAERRLLANA
201: LLDINNERFI LLSESCIPLF NFSTVYSFLI DSTLTHVDSY DLTIGRVRYD RRMYPHIRMH QWRKGSQWFE LDRAMALEVV SDTFYWPIFK AYSRCPDEHY
301: IPTLLNMRPS LGLRNANRTL TWTDWSKRRA HPRLFGEWEV NVEFLEWLRM KSVGDCKKNG ENKMRLCFLF ARKFSSTALD ELLRLASIVM YF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.