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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • plastid 1
  • mitochondrion 1
  • golgi 5
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G68380.1 CDX73678 AT3G51920.1 17360592
AT1G68380.1 CDX95314 AT3G51920.1 17360592
AT1G68380.1 CDY23174 AT3G51920.1 17360592
AT1G68380.1 CDX92401 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004302.1-P Field mustard golgi 99.75 99.75
CDY70337 Canola golgi 83.59 88.74
AT1G68380.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 75.0 75.77
CDX96025 Canola golgi, vacuole 64.65 61.54
CDX81507 Canola golgi 63.13 60.98
CDY44904 Canola golgi 63.13 60.98
CDY59035 Canola golgi 64.65 60.81
CDX73016 Canola mitochondrion 41.67 47.55
CDX78440 Canola cytosol 38.13 46.75
CDX70417 Canola cytosol 34.09 45.0
CDX94911 Canola golgi 43.69 44.94
CDY31036 Canola golgi 42.68 44.83
CDX93443 Canola golgi 43.18 44.53
CDY20644 Canola golgi 42.93 43.59
CDX87842 Canola golgi 42.68 43.44
CDY51451 Canola golgi 41.67 43.31
CDX97139 Canola golgi 41.92 43.01
CDX69735 Canola golgi 41.92 43.01
CDY43927 Canola golgi 42.17 42.93
CDY56916 Canola cytosol, golgi, plasma membrane, plastid 41.16 42.78
CDX97141 Canola golgi 41.67 42.75
CDY19328 Canola golgi, mitochondrion 40.66 42.59
CDX80552 Canola cytosol 16.41 42.48
CDX78439 Canola golgi 41.92 41.4
CDX88209 Canola golgi 36.11 40.86
CDX70676 Canola cytosol, golgi, nucleus 41.41 40.8
CDX97140 Canola golgi 41.67 40.24
CDX78674 Canola cytosol, golgi, plasma membrane 40.91 40.2
CDX69465 Canola golgi 40.91 40.0
CDY20597 Canola golgi 33.59 39.12
CDX70416 Canola golgi 41.67 37.76
CDX89388 Canola cytosol 20.45 35.53
CDY26504 Canola cytosol 13.38 34.87
CDY49466 Canola cytosol 21.97 33.85
CDX68738 Canola golgi 31.82 33.51
CDY28259 Canola golgi 31.82 33.51
CDX92736 Canola mitochondrion 31.06 32.45
CDY38285 Canola golgi 31.82 32.39
CDY46724 Canola mitochondrion 32.83 32.26
CDY42774 Canola mitochondrion 30.81 32.19
CDY03552 Canola golgi, mitochondrion 32.58 32.17
CDY25922 Canola golgi 31.57 32.13
CDY30178 Canola mitochondrion 32.07 31.59
CDX94406 Canola golgi 30.05 31.4
CDX88613 Canola golgi 30.81 31.36
CDY11878 Canola golgi 30.81 31.36
CDY66853 Canola mitochondrion 31.31 31.31
CDY12850 Canola mitochondrion 31.31 31.16
CDX83505 Canola mitochondrion 31.31 31.16
CDY03361 Canola mitochondrion 31.06 31.14
CDY01412 Canola mitochondrion 31.31 31.08
CDY34605 Canola golgi 29.55 30.95
CDY24895 Canola mitochondrion 28.79 30.56
CDX82625 Canola mitochondrion 30.3 30.38
CDY08638 Canola mitochondrion 29.04 30.34
CDY09869 Canola mitochondrion 28.03 30.33
CDY21023 Canola golgi 28.79 30.32
CDY51089 Canola golgi, mitochondrion 30.05 30.13
CDX69574 Canola mitochondrion 27.78 30.05
CDY31228 Canola golgi 28.03 30.0
CDY57290 Canola cytosol 25.76 29.48
CDY66012 Canola mitochondrion 26.26 28.49
CDY14193 Canola mitochondrion 33.08 25.0
CDX97918 Canola golgi 38.38 24.09
CDY66259 Canola cytosol 24.24 22.33
CDX73017 Canola cytosol 0.51 14.29
Protein Annotations
EnsemblPlants:CDX96026EnsemblPlantsGene:GSBRNA2T00102059001GO:A0A078E400GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0008375GO:GO:0016020GO:GO:0016740InterPro:Glyco_trans_14PANTHER:PTHR31042PANTHER:PTHR31042:SF56
PFAM:PF02485ProteinID:CDX96026ProteinID:CDX96026.1SEG:segTMHMM:TMhelixUniParc:UPI0004EE7140
MapMan:35.1:::::
Description
BnaA07g27050D
Coordinates
chrLK031892:+:699958..701893
Molecular Weight (calculated)
46462.1 Da
IEP (calculated)
9.662
GRAVY (calculated)
-0.254
Length
396 amino acids
Sequence
(BLAST)
001: MPTQKDRNSS SLFLVIKLLN PLLHHFLNLL FYFFLLCFGV VVGIIVHSSL EASSLPYYPT VQSVSQLVLV TSPPPPTSPS PLPQNYELEM FLRPPKINIM
101: HNMEDNELFW RASMDPKIRS YPFSRTPKVA FMFLTRGPLP LAPLWERFFR GCEGLFTIYI HTNPSYKESM PQGSVFLGRR IPSKRVDWAN ANMVDAERRL
201: LANALLDINN ERFLLLSESC IPLFNFTTIY SYLINSTQTH VDSYDLPFGR VRYNRRMYPH IHLHHWRKGS QWFELDRPMA LETVSDTFYW PIFRAYCRCP
301: DEHYFPTLLN LTPSLGSRNS NRTLTWTDWG KRRAHPRSFG GPEVNVEFLN WLRRSDKEYC EHKGVDKTRP CFLFARKFSS NALDKLLRFA STVMYF
Best Arabidopsis Sequence Match ( AT1G68380.1 )
(BLAST)
001: MPTQKDQNSP LSQVIELLKK LLHHFHNLLL YFFILWIGVI VGIIVYPSLQ GLSSPSSLTI QSVSQLFFVT PPPPILSPSF QDNGLDMFLI PLKNIMHDME
101: DNELLWRASM DPKIRDYPYP RIPKVAFMFL TWGPLPLAPL WERFFRGHEG LFTIYVHTNS SYDEFMPQDS VFYGRRIPSK RVDWGNANMV EAERRLLANA
201: LLDINNERFI LLSESCIPLF NFSTVYSFLI DSTLTHVDSY DLTIGRVRYD RRMYPHIRMH QWRKGSQWFE LDRAMALEVV SDTFYWPIFK AYSRCPDEHY
301: IPTLLNMRPS LGLRNANRTL TWTDWSKRRA HPRLFGEWEV NVEFLEWLRM KSVGDCKKNG ENKMRLCFLF ARKFSSTALD ELLRLASIVM YF
Arabidopsis Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C3]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.